C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich, glioma inactivated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371413 LGI1-002 ENSG00000108231 9606 + 10:93757921-93798157 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLungMuscleOvaryPlacentaTestisENST00000371413
Transcript ID Adrenal Brain Breast Colon Lung Muscle Ovary Placenta Testis
ENST00000371413 0.114±0.00 5.163±0.82 0.081±0.04 0.098±0.00 0.400±0.00 0.170±0.00 0.057±0.00 0.025±0.00 0.115±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000104 CIL_000104_0001 CGP 10:93667883-93798159
CIL_00067L CIL_00067L_0001 CGP 10:93757885-93956062

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IPI receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005576 IEA extracellular region
GO:0005615 IDA extracellular space
GO:0007399 TAS nervous system development
GO:0007411 IMP axon guidance
GO:0008283 TAS cell proliferation
GO:0030054 IEA cell junction
GO:0030307 IMP positive regulation of cell growth
GO:0031175 IMP neuron projection development
GO:0045202 IEA synapse
GO:0050806 ISS positive regulation of synaptic transmission

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087252 Lgi1-001 protein_coding Mus_musculus 0 1376
ENSMUST00000130039 Lgi1-003 protein_coding Mus_musculus 0 767
ENSMUST00000134832 Lgi1-002 retained_intron Mus_musculus 0 575

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