C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000104_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000148690-ENSG00000108231 CGP 9606 10:93667883-93798159
GeneTranscriptPositionBiotype
ENSG00000108231 (LGI1)
leucine-rich, glioma inactivated 1
ENST00000371413 (LGI1-002) 93757921-93798157 protein_coding
ENST00000371418 (LGI1-001) 93757885-93798159 protein_coding
ENST00000464250 (LGI1-004) 93777557-93778987 processed_transcript
ENST00000478763 (LGI1-003) 93757921-93758912 processed_transcript
ENST00000485458 (LGI1-005) 93777177-93777618 processed_transcript
ENSG00000148690 (FRA10AC1)
fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1
ENST00000359204 (FRA10AC1-001) 93667883-93702572 protein_coding
ENST00000460752 (FRA10AC1-002) 93669624-93675304 processed_transcript
ENST00000462771 (FRA10AC1-003) 93670775-93673031 processed_transcript
ENST00000472153 (FRA10AC1-005) 93684055-93685463 processed_transcript
ENST00000482719 (FRA10AC1-006) 93685253-93687941 processed_transcript
ENST00000483229 (FRA10AC1-004) 93669679-93672091 processed_transcript
CIL_000104_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000054237-ENSMUSG00000067242 CGP 10090 19:38188481-38308939
GeneTranscriptPositionBiotype
ENSMUSG00000054237 (Fra10ac1)
FRA10AC1 homolog (human)
ENSMUST00000067167 (Fra10ac1-201) 38188481-38224138 protein_coding
ENSMUSG00000067242 (Lgi1)
leucine-rich repeat LGI family, member 1
ENSMUST00000087252 (Lgi1-001) 38264782-38308939 protein_coding
ENSMUST00000130039 (Lgi1-003) 38265410-38301269 protein_coding
ENSMUST00000134832 (Lgi1-002) 38264782-38269046 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000104_0001ENSG00000108231ENST00000371413ENST00000371418ENST00000464250ENST00000478763ENST00000485458ENSG00000148690ENST00000359204ENST00000460752ENST00000462771ENST00000472153ENST00000482719ENST00000483229CIL_000104_0002ENSMUSG00000054237ENSMUST00000067167ENSMUSG00000067242ENSMUST00000087252ENSMUST00000130039ENSMUST00000134832
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000104_0001ENSG00000108231ENST00000371413ENST00000371418ENST00000478763ENSG00000148690ENST00000359204ENST00000460752ENST00000472153ENST00000482719ENST00000483229CIL_000104_0002ENSMUSG00000054237ENSMUST00000067167ENSMUSG00000067242ENSMUST00000087252ENSMUST00000130039ENSMUST00000134832
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108231 ENST00000371413 N/A 0.114±0.00 N/A 5.163±0.82 0.081±0.04 0.098±0.00 N/A N/A N/A 0.400±0.00 0.170±0.00 0.057±0.00 0.025±0.00 0.115±0.00
ENST00000371418 0.084±0.00 0.081±0.00 N/A 6.371±1.49 0.157±0.00 0.943±0.85 0.033±0.00 0.058±0.00 0.167±0.10 N/A 0.206±0.00 0.017±0.00 N/A 0.407±0.29
ENST00000464250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478763 N/A N/A N/A N/A 0.077±0.00 0.563±0.00 0.057±0.00 N/A 0.092±0.00 N/A 0.603±0.30 N/A N/A N/A
ENST00000485458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148690 ENST00000359204 6.488±0.00 2.893±0.00 2.221±0.00 5.747±1.92 4.416±0.00 5.307±4.15 2.595±1.33 4.072±0.00 1.989±0.75 1.673±0.65 1.586±0.99 8.244±3.95 3.545±2.19 9.156±2.67
ENST00000460752 N/A 1.061±0.00 N/A N/A 0.951±0.52 0.463±0.00 0.494±0.00 0.355±0.00 0.384±0.21 0.890±0.63 N/A 0.963±0.16 N/A 1.548±0.89
ENST00000462771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.034±0.00 N/A N/A N/A
ENST00000482719 N/A N/A N/A N/A 6.256±0.00 N/A N/A N/A 6.277±0.00 N/A 1.623±0.00 N/A N/A N/A
ENST00000483229 N/A N/A N/A N/A N/A N/A N/A N/A 2.455±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000054237 ENSMUST00000067167 2.489±0.73 4.518±1.90 6.148±0.32 7.524±1.45 2.464±0.87 1.941±0.28 2.641±0.88 3.549±0.64 5.220±2.45 3.413±0.87 5.453±0.22 6.014±4.49 6.350±2.19 8.582±7.82
ENSMUSG00000067242 ENSMUST00000087252 0.356±0.06 0.177±0.08 0.470±0.02 5.235±3.00 0.074±0.04 0.102±0.04 1.336±0.39 0.056±0.02 0.025±0.03 0.132±0.07 1.009±0.55 0.204±0.11 0.014±0.01 0.067±0.03
ENSMUST00000130039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A
ENSMUST00000134832 N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A 0.094±0.03 0.005±0.00 0.093±0.04

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