C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272895 ABCA12-001 ENSG00000144452 9606 - 2:214931542-215138428 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000272895
Transcript ID Bladder Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000272895 0.021±0.00 0.014±0.01 0.062±0.00 0.006±0.00 0.030±0.00 0.019±0.00 0.035±0.02 0.134±0.04 0.126±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AP CIL_0000AP_0002 CGP 2:214725646-215138428
CIL_0005MH CIL_0005MH_0001 CGP 2:214931542-215349773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IPI receptor binding
GO:0005319 IDA lipid transporter activity
GO:0005515 IPI protein binding
GO:0005524 NAS:IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005743 IEA mitochondrial inner membrane
GO:0005829 IEA cytosol
GO:0005886 IDA plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006869 NAS lipid transport
GO:0010875 IDA positive regulation of cholesterol efflux
GO:0016021 NAS integral component of membrane
GO:0016887 IEA ATPase activity
GO:0019725 NAS cellular homeostasis
GO:0030216 IEA keratinocyte differentiation
GO:0031424 IEA keratinization
GO:0032940 IMP secretion by cell
GO:0033700 IMP phospholipid efflux
GO:0034040 IC lipid-transporting ATPase activity
GO:0034191 IPI apolipoprotein A-I receptor binding
GO:0035627 IEA ceramide transport
GO:0043129 IEA surfactant homeostasis
GO:0045055 IMP regulated secretory pathway
GO:0048286 IEA lung alveolus development
GO:0055088 IEA lipid homeostasis
GO:0061436 IEA establishment of skin barrier
GO:0072659 IDA protein localization to plasma membrane
GO:0097209 IDA epidermal lamellar body
GO:2000010 IEA positive regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087268 Abca12-001 protein_coding Mus_musculus 0 8495
ENSMUST00000187097 Abca12-004 retained_intron Mus_musculus 0 2370
ENSMUST00000188752 Abca12-005 retained_intron Mus_musculus 0 1757
ENSMUST00000189102 Abca12-002 retained_intron Mus_musculus 0 486

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