C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ngg1 interacting factor 3-like 1 (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087521 Nif3l1-001 ENSMUSG00000026036 10090 + 1:58445151-58463456 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000087521
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000087521 3.071±0.32 3.509±0.34 2.858±0.00 5.425±0.17 3.117±0.59 3.654±0.00 1.229±0.00 2.367±0.22 2.672±1.40 3.570±0.25 5.297±1.46 3.207±0.00 3.444±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002AY CIL_0002AY_0002 CGP 1:58410189-58445486
CIL_0002AV CIL_0002AV_0002 CGP 1:58430994-58481816
CIL_0002AW CIL_0002AW_0002 CGP 1:58445151-58505109

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003934 IEA GTP cyclohydrolase I activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0008134 IEA transcription factor binding
GO:0035998 IEA 7,8-dihydroneopterin 3'-triphosphate biosynthetic process
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359683 NIF3L1-001 protein_coding Homo_sapiens 0 1219
ENST00000409020 NIF3L1-004 protein_coding Homo_sapiens 0 1219
ENST00000409129 NIF3L1-009 protein_coding Homo_sapiens 0 604
ENST00000409357 NIF3L1-003 protein_coding Homo_sapiens 0 1219
ENST00000409588 NIF3L1-005 protein_coding Homo_sapiens 0 745
ENST00000416651 NIF3L1-201 protein_coding Homo_sapiens 0 723
ENST00000426253 NIF3L1-007 protein_coding Homo_sapiens 0 725
ENST00000436412 NIF3L1-010 protein_coding Homo_sapiens 0 289
ENST00000454952 NIF3L1-008 protein_coding Homo_sapiens 0 538

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