C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ngg1 interacting factor 3-like 1 (S. pombe)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026036 Nif3l1 10090 + 1:58445151-58481816 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087521 Nif3l1-001 58445151-58463456 protein_coding
  ENSMUST00000114337 Nif3l1-002 58445267-58481816 protein_coding
  ENSMUST00000129759 Nif3l1-004 58445628-58450507 nonsense_mediated_decay
  ENSMUST00000140723 Nif3l1-005 58449167-58457800 retained_intron
  ENSMUST00000151272 Nif3l1-003 58445729-58448050 protein_coding
  ENSMUST00000171597 Nif3l1-201 58447631-58462266 protein_coding
  ENSMUST00000185578 Nif3l1-007 58453404-58456188 retained_intron
  ENSMUST00000188295 Nif3l1-008 58457685-58461384 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087521ENSMUST00000114337ENSMUST00000171597
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087521 3.071±0.32 3.509±0.34 2.858±0.00 5.425±0.17 3.117±0.59 3.654±0.00 1.229±0.00 2.367±0.22 2.672±1.40 3.570±0.25 N/A 5.297±1.46 3.207±0.00 3.444±0.28
ENSMUST00000114337 6.940±0.53 5.879±2.00 N/A N/A 5.018±0.80 5.007±1.23 3.172±0.00 3.757±0.74 3.653±0.32 4.292±0.81 N/A 8.097±1.42 N/A N/A
ENSMUST00000171597 6.567±2.01 4.700±0.76 7.351±0.00 10.929±4.57 4.602±1.89 4.499±0.42 2.881±0.57 4.769±1.01 5.404±3.68 3.882±0.29 3.448±0.37 8.972±2.10 8.941±2.77 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002AY CIL_0002AY_0002 CGP 1:58410189-58445486
CIL_0002AV CIL_0002AV_0002 CGP 1:58430994-58481816
CIL_0002AW CIL_0002AW_0002 CGP 1:58445151-58505109

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003934 IEA GTP cyclohydrolase I activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0008134 IEA transcription factor binding
GO:0035998 IEA 7,8-dihydroneopterin 3'-triphosphate biosynthetic process
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045249 nif3l1 NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae) protein_coding Danio_rerio
ENSG00000196290 NIF3L1 NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae) protein_coding Homo_sapiens

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