C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0002AY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000013441-ENSG00000240344 CGP 9606 2:200853009-200889303
GeneTranscriptPositionBiotype
ENSG00000013441 (CLK1)
CDC-like kinase 1
ENST00000321356 (CLK1-001) 200853009-200864699 protein_coding
ENST00000409403 (CLK1-006) 200853113-200864662 nonsense_mediated_decay
ENST00000409769 (CLK1-005) 200853098-200858166 protein_coding
ENST00000432425 (CLK1-003) 200853081-200864656 nonsense_mediated_decay
ENST00000434813 (CLK1-007) 200853196-200864561 protein_coding
ENST00000461326 (CLK1-013) 200853247-200854134 retained_intron
ENST00000461981 (CLK1-002) 200853076-200860983 retained_intron
ENST00000464454 (CLK1-016) 200853077-200854013 retained_intron
ENST00000472679 (CLK1-015) 200853082-200853995 retained_intron
ENST00000473565 (CLK1-004) 200853081-200864691 retained_intron
ENST00000481641 (CLK1-012) 200861090-200864252 retained_intron
ENST00000482590 (CLK1-010) 200861332-200864658 retained_intron
ENST00000492793 (CLK1-011) 200860965-200864657 processed_transcript
ENST00000496205 (CLK1-014) 200853332-200854886 retained_intron
ENST00000621181 (CLK1-201) 200853009-200864744 protein_coding
ENSG00000240344 (PPIL3)
peptidylprolyl isomerase (cyclophilin)-like 3
ENST00000286175 (PPIL3-001) 200870907-200889269 protein_coding
ENST00000392283 (PPIL3-002) 200870956-200889154 protein_coding
ENST00000409264 (PPIL3-006) 200871213-200889015 protein_coding
ENST00000409361 (PPIL3-007) 200871230-200889136 protein_coding
ENST00000409449 (PPIL3-008) 200871267-200889303 protein_coding
ENST00000415562 (PPIL3-005) 200871152-200887687 nonsense_mediated_decay
ENST00000443398 (PPIL3-011) 200876964-200889266 protein_coding
ENST00000457063 (PPIL3-012) 200881421-200888579 protein_coding
ENST00000463866 (PPIL3-009) 200871374-200881742 retained_intron
ENST00000465823 (PPIL3-003) 200870956-200889276 processed_transcript
ENST00000470442 (PPIL3-014) 200884902-200889046 retained_intron
ENST00000487879 (PPIL3-016) 200885319-200889044 retained_intron
ENST00000492074 (PPIL3-013) 200881422-200889157 processed_transcript
ENST00000497263 (PPIL3-010) 200876942-200889066 processed_transcript
ENST00000497501 (PPIL3-015) 200885297-200889296 processed_transcript
ENSG00000252759 (Y_RNA)
Y RNA
ENST00000516950 (Y_RNA.1-912) 200863152-200863247 misc_RNA
CIL_0002AY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026034-ENSMUSG00000026035 CGP 10090 1:58410189-58445486
GeneTranscriptPositionBiotype
ENSMUSG00000026034 (Clk1)
CDC-like kinase 1
ENSMUST00000034868 (Clk1-001) 58412000-58424066 protein_coding
ENSMUST00000123580 (Clk1-006) 58412000-58416765 retained_intron
ENSMUST00000129303 (Clk1-009) 58412316-58413825 processed_transcript
ENSMUST00000129577 (Clk1-003) 58416143-58424066 retained_intron
ENSMUST00000131051 (Clk1-012) 58416910-58417426 retained_intron
ENSMUST00000135380 (Clk1-008) 58414615-58421258 retained_intron
ENSMUST00000139787 (Clk1-011) 58412000-58412861 processed_transcript
ENSMUST00000141570 (Clk1-010) 58412000-58413437 processed_transcript
ENSMUST00000147258 (Clk1-007) 58421626-58424066 retained_intron
ENSMUST00000148330 (Clk1-004) 58412000-58424066 nonsense_mediated_decay
ENSMUST00000151338 (Clk1-005) 58412000-58424066 nonsense_mediated_decay
ENSMUST00000156931 (Clk1-002) 58410189-58424066 retained_intron
ENSMUST00000186552 (Clk1-013) 58414590-58420398 retained_intron
ENSMUSG00000026035 (Ppil3)
peptidylprolyl isomerase (cyclophilin)-like 3
ENSMUST00000081677 (Ppil3-001) 58430997-58445486 protein_coding
ENSMUST00000114345 (Ppil3-002) 58433787-58445369 protein_coding
ENSMUST00000114348 (Ppil3-003) 58430994-58445434 protein_coding
ENSMUST00000117069 (Ppil3-004) 58430994-58445429 protein_coding
ENSMUST00000124550 (Ppil3-005) 58438176-58445176 retained_intron
ENSMUST00000185990 (Ppil3-008) 58434419-58445482 protein_coding
ENSMUST00000186242 (Ppil3-009) 58431020-58432185 processed_transcript
ENSMUST00000188896 (Ppil3-006) 58438830-58440968 retained_intron
ENSMUST00000190048 (Ppil3-007) 58434415-58445439 protein_coding
ENSMUSG00000026036 (Nif3l1)
Ngg1 interacting factor 3-like 1 (S. pombe)
ENSMUST00000087521 (Nif3l1-001) 58445151-58463456 protein_coding
ENSMUST00000114337 (Nif3l1-002) 58445267-58481816 protein_coding
ENSMUST00000129759 (Nif3l1-004) 58445628-58450507 nonsense_mediated_decay
ENSMUST00000140723 (Nif3l1-005) 58449167-58457800 retained_intron
ENSMUST00000151272 (Nif3l1-003) 58445729-58448050 protein_coding
ENSMUST00000171597 (Nif3l1-201) 58447631-58462266 protein_coding
ENSMUST00000185578 (Nif3l1-007) 58453404-58456188 retained_intron
ENSMUST00000188295 (Nif3l1-008) 58457685-58461384 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002AY_0001ENSG00000013441ENST00000321356ENST00000409403ENST00000409769ENST00000432425ENST00000434813ENST00000461981ENST00000473565ENSG00000240344ENST00000286175ENST00000392283ENST00000409264ENST00000409361ENST00000409449ENST00000415562ENST00000443398ENST00000457063ENST00000463866ENST00000465823ENST00000470442ENST00000487879ENSG00000252759ENST00000516950CIL_0002AY_0002ENSMUSG00000026034ENSMUST00000034868ENSMUST00000123580ENSMUST00000129577ENSMUST00000147258ENSMUST00000148330ENSMUST00000151338ENSMUST00000186552ENSMUSG00000026035ENSMUST00000081677ENSMUST00000114348ENSMUSG00000026036ENSMUST00000087521ENSMUST00000114337ENSMUST00000171597
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000013441 ENST00000321356 N/A N/A 2.743±0.00 7.954±0.00 16.083±0.00 4.690±0.00 2.979±0.00 N/A N/A N/A 3.340±0.00 16.668±6.33 5.795±2.67 12.317±0.00
ENST00000409403 N/A N/A N/A N/A 4.487±0.00 12.630±0.00 N/A N/A 1.733±0.00 28.502±0.00 10.253±0.00 11.335±0.00 5.152±0.00 16.959±2.73
ENST00000409769 N/A N/A N/A N/A N/A N/A N/A 6.667±0.00 N/A N/A N/A N/A N/A N/A
ENST00000432425 6.600±0.00 N/A N/A 3.138±0.00 7.416±0.00 7.690±0.00 N/A 5.332±0.00 2.358±0.00 N/A N/A 9.815±3.17 3.543±0.17 10.460±0.00
ENST00000434813 4.482±0.00 12.691±0.00 N/A 4.098±0.00 5.477±0.00 19.224±0.00 9.300±0.00 8.762±0.00 2.852±0.00 49.636±0.00 19.652±0.00 N/A N/A 10.415±3.39
ENST00000461326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461981 N/A 7.261±0.00 N/A 1.636±0.00 4.820±0.96 N/A N/A 2.875±0.65 N/A N/A N/A 3.618±1.33 N/A N/A
ENST00000464454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473565 2.315±0.00 7.121±0.00 7.229±0.00 8.255±5.51 8.167±0.00 10.927±0.00 4.518±0.34 7.352±2.03 6.740±0.00 21.710±0.00 4.192±0.00 6.591±1.93 1.719±0.22 N/A
ENST00000481641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240344 ENST00000286175 N/A N/A N/A 0.764±0.00 N/A N/A N/A N/A N/A N/A N/A 2.923±0.00 0.605±0.00 N/A
ENST00000392283 1.895±0.00 1.307±0.00 0.964±0.00 3.031±0.45 1.929±0.39 1.560±0.60 1.449±0.34 1.669±0.50 1.412±0.13 1.571±0.00 1.388±0.65 6.074±2.23 3.855±2.23 2.592±0.00
ENST00000409264 2.409±0.00 4.118±0.00 N/A 1.632±0.00 3.014±0.00 N/A 1.540±0.00 3.558±0.00 1.352±0.00 0.985±0.00 N/A 6.442±3.17 1.938±0.00 4.879±0.00
ENST00000409361 N/A N/A N/A 3.474±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409449 N/A N/A 2.112±0.00 N/A N/A 1.936±0.53 1.839±0.00 N/A N/A 1.655±0.00 N/A N/A 2.293±0.00 N/A
ENST00000415562 N/A N/A N/A 4.109±0.00 2.428±0.00 N/A 2.011±0.00 2.064±0.00 2.396±0.00 N/A 1.095±0.00 N/A N/A N/A
ENST00000443398 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.378±0.00 N/A N/A N/A N/A
ENST00000457063 N/A N/A 0.916±0.00 1.801±0.00 N/A N/A N/A N/A 1.448±0.00 N/A N/A N/A N/A N/A
ENST00000463866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.616±0.00
ENST00000465823 N/A N/A N/A N/A N/A 1.145±0.00 N/A N/A N/A N/A N/A 1.433±0.00 0.694±0.00 N/A
ENST00000470442 N/A N/A N/A N/A N/A N/A N/A 1.379±0.00 N/A N/A N/A N/A N/A N/A
ENST00000487879 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.064±0.00 N/A N/A N/A N/A
ENST00000492074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252759 ENST00000516950 0.418±0.00 1.218±0.00 N/A 1.583±0.00 448.138±447.95 0.180±0.00 0.607±0.00 N/A N/A 0.353±0.00 N/A 0.954±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026034 ENSMUST00000034868 10.212±2.30 3.739±1.33 54.530±20.61 19.559±3.88 8.402±1.96 7.251±1.24 6.186±1.16 7.836±3.26 21.893±14.96 17.832±5.94 7.767±2.28 21.205±18.85 28.930±4.75 2.927±0.66
ENSMUST00000123580 14.881±6.10 9.581±1.07 N/A 15.278±3.17 15.211±4.13 10.639±2.74 5.366±0.49 6.848±1.03 8.158±4.78 18.761±0.90 N/A 14.016±3.11 13.068±0.00 3.020±0.19
ENSMUST00000129303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129577 6.680±0.62 4.330±0.83 26.920±14.02 10.635±7.51 9.289±2.71 7.104±0.85 4.799±0.00 4.993±1.25 9.919±6.38 13.008±3.68 2.715±0.00 10.835±5.85 5.927±1.07 2.567±0.35
ENSMUST00000131051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147258 N/A N/A N/A 159.299±0.00 N/A N/A N/A N/A N/A N/A N/A 705.448±0.00 266.632±5.13 98.256±0.00
ENSMUST00000148330 9.937±0.44 N/A 51.186±14.58 26.177±9.53 12.773±3.76 6.585±2.31 7.717±2.94 6.198±1.68 13.288±6.66 12.040±0.00 7.585±1.18 25.681±18.35 12.578±0.22 8.085±1.02
ENSMUST00000151338 N/A N/A N/A 13.275±0.00 23.412±0.00 N/A N/A N/A 6.000±2.63 12.294±0.00 N/A 8.856±2.71 N/A 5.660±0.00
ENSMUST00000156931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186552 N/A 8.644±1.22 N/A 51.388±0.00 N/A N/A N/A N/A N/A N/A N/A 144.163±60.29 63.661±22.51 23.084±0.00
ENSMUSG00000026035 ENSMUST00000081677 N/A N/A N/A N/A 8.486±0.00 N/A 5.486±0.00 9.167±0.00 N/A N/A 6.526±0.00 18.285±0.00 N/A 6.638±0.00
ENSMUST00000114345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000114348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.980±0.41 N/A N/A N/A
ENSMUST00000117069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026036 ENSMUST00000087521 3.071±0.32 3.509±0.34 2.858±0.00 5.425±0.17 3.117±0.59 3.654±0.00 1.229±0.00 2.367±0.22 2.672±1.40 3.570±0.25 N/A 5.297±1.46 3.207±0.00 3.444±0.28
ENSMUST00000114337 6.940±0.53 5.879±2.00 N/A N/A 5.018±0.80 5.007±1.23 3.172±0.00 3.757±0.74 3.653±0.32 4.292±0.81 N/A 8.097±1.42 N/A N/A
ENSMUST00000129759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171597 6.567±2.01 4.700±0.76 7.351±0.00 10.929±4.57 4.602±1.89 4.499±0.42 2.881±0.57 4.769±1.01 5.404±3.68 3.882±0.29 3.448±0.37 8.972±2.10 8.941±2.77 N/A
ENSMUST00000185578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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