C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409020 NIF3L1-004 ENSG00000196290 9606 + 2:200889385-200903930 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartMuscleOvaryPlacentaTestisENST00000409020
Transcript ID Adipose Adrenal Brain Colon Heart Muscle Ovary Placenta Testis
ENST00000409020 1.055±0.00 3.167±0.00 3.377±1.51 0.877±0.00 1.149±0.00 3.051±0.00 3.408±1.93 3.321±1.73 3.742±2.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002AV CIL_0002AV_0001 CGP 2:200870907-200903930
CIL_0002AW CIL_0002AW_0001 CGP 2:200889327-200963680

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003934 IEA GTP cyclohydrolase I activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0008134 IPI transcription factor binding
GO:0035998 IEA 7,8-dihydroneopterin 3'-triphosphate biosynthetic process
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171597 Nif3l1-201 protein_coding Mus_musculus 0 1219
ENSMUST00000087521 Nif3l1-001 protein_coding Mus_musculus 0 1219
ENSMUST00000114337 Nif3l1-002 protein_coding Mus_musculus 0 1026
ENSMUST00000129759 Nif3l1-004 nonsense_mediated_decay Mus_musculus 0 497
ENSMUST00000140723 Nif3l1-005 retained_intron Mus_musculus 0 453
ENSMUST00000151272 Nif3l1-003 protein_coding Mus_musculus 0 449
ENSMUST00000185578 Nif3l1-007 retained_intron Mus_musculus 1.99965e-42 178

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