C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: origin recognition complex, subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540442 ORC4-204 ENSG00000115947 9606 - 2:147930397-148020737 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyOvaryPlacentaTestisENST00000540442
Transcript ID Colon Kidney Ovary Placenta Testis
ENST00000540442 2.006±0.00 3.280±0.00 6.208±0.00 1.405±0.00 7.143±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GY CIL_0007GY_0001 CGP 2:144388001-147930826
CIL_0006MB CIL_0006MB_0001 CGP 2:147844517-148021604
CIL_0006MC CIL_0006MC_0001 CGP 2:147930397-148518236

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000166 IDA nucleotide binding
GO:0000278 TAS mitotic cell cycle
GO:0000808 IDA:IEA origin recognition complex
GO:0003677 IEA DNA binding
GO:0003688 IMP DNA replication origin binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005664 IDA nuclear origin of replication recognition complex
GO:0006260 TAS:IEA DNA replication
GO:0006270 IMP DNA replication initiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028098 Orc4-001 protein_coding Mus_musculus 0 1531
ENSMUST00000154784 Orc4-004 processed_transcript Mus_musculus 0 985
ENSMUST00000141441 Orc4-003 processed_transcript Mus_musculus 0 981
ENSMUST00000142851 Orc4-008 protein_coding Mus_musculus 0 857
ENSMUST00000063886 Acvr2a-001 protein_coding Mus_musculus 0 560
ENSMUST00000150492 Orc4-011 processed_transcript Mus_musculus 0 553
ENSMUST00000128618 Orc4-012 processed_transcript Mus_musculus 0 490
ENSMUST00000123789 Orc4-009 processed_transcript Mus_musculus 0 449
ENSMUST00000156956 Orc4-013 processed_transcript Mus_musculus 0 446
ENSMUST00000090976 Orc4-002 protein_coding Mus_musculus 0 370
ENSMUST00000149679 Orc4-006 protein_coding Mus_musculus 2.8026e-45 189
ENSMUST00000123809 Orc4-007 processed_transcript Mus_musculus 2.8026e-45 189
ENSMUST00000123271 Orc4-005 protein_coding Mus_musculus 7e-27 128
ENSMUST00000153150 Orc4-010 processed_transcript Mus_musculus 3e-25 122
ENSMUST00000185821 Uvssa-004 protein_coding Mus_musculus 0.00000000003 77
ENSMUST00000131752 Uvssa-002 nonsense_mediated_decay Mus_musculus 0.00000000003 77
ENSMUST00000087864 Uvssa-001 protein_coding Mus_musculus 0.00000000003 77

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