C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: formin-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088233 Fmnl3-001 ENSMUSG00000023008 10090 - 15:99317225-99370482 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088233
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088233 11.372±1.33 8.853±1.17 3.287±0.22 7.512±3.36 7.345±3.13 3.316±0.73 7.130±0.71 10.910±0.44 1.748±1.29 24.919±2.86 1.923±0.74 22.041±4.00 9.692±6.23 2.336±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009O CIL_00009O_0002 CGP 15:99317225-99410049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0007010 ISS cytoskeleton organization
GO:0008360 ISS regulation of cell shape
GO:0016477 ISS cell migration
GO:0017048 IEA Rho GTPase binding
GO:0030036 IEA actin cytoskeleton organization
GO:0032794 IDA GTPase activating protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000147440 fmnl3-002 protein_coding Danio_rerio 0 865
ENSDART00000109023 fmnl3-202 protein_coding Danio_rerio 0 846
ENSDART00000112883 fmnl2b-201 protein_coding Danio_rerio 0 420
ENST00000328118 FMNL1-201 protein_coding Homo_sapiens 0 255
ENST00000331495 FMNL1-001 protein_coding Homo_sapiens 0 472
ENST00000335154 FMNL3-002 protein_coding Homo_sapiens 0 4119
ENST00000352151 FMNL3-001 protein_coding Homo_sapiens 0 3212
ENST00000549137 FMNL3-004 retained_intron Homo_sapiens 0 2191
ENST00000550488 FMNL3-003 protein_coding Homo_sapiens 0 4233
ENST00000550970 FMNL3-005 retained_intron Homo_sapiens 0 440
ENST00000586643 FMNL1-007 protein_coding Homo_sapiens 9.94922e-44 182
ENST00000587489 FMNL1-006 protein_coding Homo_sapiens 0 239
ENST00000587856 FMNL1-005 retained_intron Homo_sapiens 0 468
ENST00000592006 FMNL1-013 processed_transcript Homo_sapiens 0 411

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