C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: formin-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000550488 FMNL3-003 ENSG00000161791 9606 - 12:49644931-49707220 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLungOvaryPlacentaENST00000550488
Transcript ID Adipose Brain Breast Colon Heart Lung Ovary Placenta
ENST00000550488 10.381±0.00 1.142±0.00 3.317±0.00 3.158±0.00 0.762±0.00 6.137±0.00 3.007±0.00 3.588±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009O CIL_00009O_0001 CGP 12:49636499-49764934

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005488 IEA binding
GO:0005737 IDA cytoplasm
GO:0007010 IMP cytoskeleton organization
GO:0008360 IEA:IMP regulation of cell shape
GO:0016043 IEA cellular component organization
GO:0016477 IEA:IMP cell migration
GO:0017048 IEA Rho GTPase binding
GO:0030036 IEA actin cytoskeleton organization
GO:0032794 ISS GTPase activating protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088233 Fmnl3-001 protein_coding Mus_musculus 0 4233
ENSMUST00000120633 Fmnl3-003 protein_coding Mus_musculus 0 4045
ENSMUST00000081224 Fmnl3-002 protein_coding Mus_musculus 0 3193
ENSMUST00000140368 Fmnl3-006 processed_transcript Mus_musculus 0 512
ENSMUST00000139767 Fmnl3-005 retained_intron Mus_musculus 0 340
ENSMUST00000021322 Fmnl1-006 retained_intron Mus_musculus 0.0000000002 73
ENSMUST00000107027 Fmnl1-002 protein_coding Mus_musculus 0.0000000002 73

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