C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gastrulation brain homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088311 Gbx1-001 ENSMUSG00000067724 10090 - 5:24502757-24527202 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088311 0.060±0.03 0.013±0.01 0.032±0.02 0.481±0.19 0.044±0.03 0.034±0.01 0.020±0.01 0.050±0.02 0.010±0.00 0.025±0.01 0.020±0.00 0.077±0.06 0.033±0.02 0.083±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0007RX CIL_0007RX_0002 VISTA 5:24430554-25031843
CIL_0004EO CIL_0004EO_0002 CGP 5:24452177-24527202
CIL_0001BI CIL_0001BI_0003 CGP 5:24502757-24540978

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007628 IMP adult walking behavior
GO:0019230 IMP proprioception
GO:0021522 IMP spinal cord motor neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048663 IMP neuron fate commitment
GO:0097374 IMP sensory neuron axon guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297537 GBX1-001 protein_coding Homo_sapiens 0 1310
ENST00000302945 GSX1-001 protein_coding Homo_sapiens 0.000008 57
ENST00000306318 GBX2-001 protein_coding Homo_sapiens 4e-20 104
ENST00000551105 GBX2-003 protein_coding Homo_sapiens 2e-20 104

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