C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gastrulation brain homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306318 GBX2-001 ENSG00000168505 9606 - 2:236165236-236168369 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaTestisENST00000306318
Transcript ID Brain Placenta Testis
ENST00000306318 0.097±0.08 0.140±0.02 0.246±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RE CIL_0003RE_0001 CGP 2:235494089-236168369
CIL_0007U0 CIL_0007U0_0001 VISTA 2:235564814-236166052
CIL_0007RK CIL_0007RK_0001 VISTA 2:235753955-236356213
CIL_0008K4 CIL_0008K4_0001 VISTA 2:235862720-236463204
CIL_0007XN CIL_0007XN_0001 VISTA 2:235956423-236557500
CIL_0003RD CIL_0003RD_0001 CGP 2:236165236-236264409

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001569 IEA patterning of blood vessels
GO:0001755 IEA neural crest cell migration
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 TAS nervous system development
GO:0007411 IEA axon guidance
GO:0008283 IEA cell proliferation
GO:0021549 IEA cerebellum development
GO:0021555 IEA midbrain-hindbrain boundary morphogenesis
GO:0021568 IEA rhombomere 2 development
GO:0021794 IEA thalamus development
GO:0021884 IEA forebrain neuron development
GO:0021930 IEA cerebellar granule cell precursor proliferation
GO:0030902 IEA hindbrain development
GO:0030917 IEA midbrain-hindbrain boundary development
GO:0035239 IEA tube morphogenesis
GO:0042472 IEA inner ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0048483 IEA autonomic nervous system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036954 Gbx2-001 protein_coding Mus_musculus 0 2041
ENSMUST00000187633 Gbx2-002 retained_intron Mus_musculus 0 1035
ENSDART00000015333 gbx2-001 protein_coding Danio_rerio 0 207
ENSMUST00000088311 Gbx1-001 protein_coding Mus_musculus 4e-20 104

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