C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gastrulation brain homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000297537 GBX1-001 ENSG00000164900 9606 - 7:151148589-151167548 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartMuscleENST00000297537
Transcript ID Breast Heart Muscle
ENST00000297537 0.036±0.00 0.118±0.00 0.073±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0004EO CIL_0004EO_0001 CGP 7:151085831-151174745
CIL_0007RX CIL_0007RX_0001 VISTA 7:151109813-151711422
CIL_0001BI CIL_0001BI_0002 CGP 7:151148589-151187832

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007628 IEA adult walking behavior
GO:0019230 IEA proprioception
GO:0021522 IEA spinal cord motor neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048663 IEA neuron fate commitment
GO:0097374 IEA sensory neuron axon guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088311 Gbx1-001 protein_coding Mus_musculus 0 1310
ENSDART00000015333 gbx2-001 protein_coding Danio_rerio 0 193
ENSMUST00000036954 Gbx2-001 protein_coding Mus_musculus 4e-17 94

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