C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane 9 superfamily protein member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089027 Tm9sf4-001 ENSMUSG00000068040 10090 + 2:153161303-153210466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089027
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089027 19.692±2.73 22.139±3.29 13.664±0.41 16.378±1.24 16.005±2.31 46.658±3.24 11.189±0.42 17.731±1.25 12.279±2.56 16.668±1.93 6.368±0.61 20.264±5.54 17.084±10.17 6.588±3.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071A CIL_00071A_0003 CGP 2:153108468-153210466

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000217315 TM9SF4-001 protein_coding Homo_sapiens 0 2846
ENST00000398022 TM9SF4-002 protein_coding Homo_sapiens 0 3003
ENST00000442842 TM9SF4-006 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000450829 TM9SF4-005 nonsense_mediated_decay Homo_sapiens 0 255
ENST00000479591 TM9SF4-008 retained_intron Homo_sapiens 0 484
ENST00000495749 TM9SF4-004 retained_intron Homo_sapiens 0 743

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