C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromatin accessibility complex 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089765 Chrac1-001 ENSMUSG00000068391 10090 + 15:73090392-73094075 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089765
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089765 26.131±0.59 33.996±1.78 32.016±4.51 16.738±4.89 32.012±7.54 22.610±2.90 32.017±3.68 32.955±1.69 26.652±7.78 26.222±0.92 36.902±2.61 35.165±4.55 23.319±5.22 207.562±49.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Y5 CIL_0002Y5_0002 CGP 15:72589621-73097554
CIL_0002XO CIL_0002XO_0002 CGP 15:73090392-73184840

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003887 IEA DNA-directed DNA polymerase activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0071897 IEA DNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220913 CHRAC1-001 protein_coding Homo_sapiens 0 409
ENST00000511007 RP11-392C20.1-001 processed_pseudogene Homo_sapiens 0 259
ENST00000518971 CHRAC1-003 protein_coding Homo_sapiens 1e-16 92
ENST00000519533 CHRAC1-002 protein_coding Homo_sapiens 8e-21 106
ENST00000519618 CHRAC1-004 protein_coding Homo_sapiens 0 217
ENST00000523569 CHRAC1-005 retained_intron Homo_sapiens 0 219

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