C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8225
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090257 Gm8225-201 ENSMUSG00000068604 10090 + 17:26542760-26543715 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090257
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090257 0.298±0.18 0.284±0.14 6.886±6.81 3.421±4.51 0.220±0.16 0.341±0.16 0.075±0.03 0.141±0.05 5.124±10.64 0.193±0.08 0.148±0.09 0.342±0.17 0.131±0.01 0.211±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0002 VISTA 17:26208852-26810691
CIL_000915 CIL_000915_0002 VISTA 17:26527896-27128643

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation
GO:0015935 IEA small ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000438210 RP3-342P20.2-001 processed_pseudogene Homo_sapiens 0 739
ENST00000445918 RP11-388B24.4-001 processed_pseudogene Homo_sapiens 0 595
ENST00000480705 RP11-296A18.5-001 processed_pseudogene Homo_sapiens 0 800
ENST00000488906 RP5-867C24.1-001 processed_pseudogene Homo_sapiens 0 678

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