C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480705 RP11-296A18.5-001 ENSG00000233406 9606 - 1:51250603-51251472 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000480705
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000480705 0.307±0.00 0.388±0.00 1.626±0.00 0.118±0.01 0.380±0.08 0.219±0.07 0.146±0.06 0.191±0.00 0.609±0.50 0.657±0.42 0.337±0.00 0.246±0.09 0.208±0.00 0.534±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WB CIL_0006WB_0002 CGP 1:51236271-51345116

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 922
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 922
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 922
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 0 917
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 0 917
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 905
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 889
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 887
ENSMUST00000075898 Gm5921-001 processed_pseudogene Mus_musculus 0 883
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 0 869
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 865
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 861
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 854
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 854
ENSMUST00000120203 Gm12933-001 processed_pseudogene Mus_musculus 0 852
ENSMUST00000152407 Rps2-003 protein_coding Mus_musculus 0 852
ENSMUST00000132939 Gm9013-001 processed_pseudogene Mus_musculus 0 846
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 830
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 811
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 808
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 806
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 802
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 802
ENSMUST00000090257 Gm8225-201 protein_coding Mus_musculus 0 800
ENSMUST00000121190 Gm7860-001 processed_pseudogene Mus_musculus 0 780
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 771
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 771
ENSMUST00000121420 Gm12176-001 processed_pseudogene Mus_musculus 0 754
ENSMUST00000117955 Gm14263-001 processed_pseudogene Mus_musculus 0 712
ENSMUST00000121414 Rps2-ps9-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 708
ENSMUST00000121140 Gm12109-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 686
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 667
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 667
ENSMUST00000120626 Gm12922-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000122809 Rps2-004 retained_intron Mus_musculus 0 651
ENSMUST00000119871 Gm12733-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000119217 Gm8302-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000121977 Rps2-ps4-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000117116 Gm13047-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000159783 Gm8194-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000190239 RP23-16N14.5-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000129580 Rps2-005 retained_intron Mus_musculus 0 579
ENSMUST00000161130 Gm9550-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000117930 Gm13094-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000129984 Rps2-007 retained_intron Mus_musculus 0 412
ENSMUST00000165577 Gm17150-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000120471 Gm11888-001 processed_pseudogene Mus_musculus 0 353
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 0 228
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 1e-36 158

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