C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000445918 RP11-388B24.4-001 ENSG00000235377 9606 + 9:82130752-82131632 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMuscleOvaryTestisENST00000445918
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000445918 0.123±0.00 0.312±0.00 0.057±0.00 0.126±0.00 0.096±0.00 0.232±0.00 0.178±0.00 0.428±0.00 0.139±0.00 0.073±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KE CIL_0007KE_0002 UCNEbase 9:79125686-82895571
CIL_0008ZK CIL_0008ZK_0001 VISTA 9:82031978-82633121
CIL_0008OT CIL_0008OT_0001 VISTA 9:82063359-82664216

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 0 682
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 0 682
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 676
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 676
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 665
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 660
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 658
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000132939 Gm9013-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000186517 RP23-128A11.3-001 processed_pseudogene Mus_musculus 0 641
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 641
ENSMUST00000075898 Gm5921-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000121713 Gm10420-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000120203 Gm12933-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 0 627
ENSMUST00000152407 Rps2-003 protein_coding Mus_musculus 0 616
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 614
ENSMUST00000121190 Gm7860-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 595
ENSMUST00000090257 Gm8225-201 protein_coding Mus_musculus 0 595
ENSMUST00000119653 Gm16148-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000169235 Gm7502-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000121414 Rps2-ps9-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000119578 Gm11643-001 processed_pseudogene Mus_musculus 0 483
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 479
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 479
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000120626 Gm12922-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000119217 Gm8302-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000122809 Rps2-004 retained_intron Mus_musculus 0 449
ENSMUST00000129580 Rps2-005 retained_intron Mus_musculus 0 429
ENSMUST00000190239 RP23-16N14.5-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000121977 Rps2-ps4-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000120110 Gm13204-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000117930 Gm13094-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000183369 Gm18014-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000165577 Gm17150-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000140747 Gm16305-001 unprocessed_pseudogene Mus_musculus 0 265
ENSMUST00000129984 Rps2-007 retained_intron Mus_musculus 0 255
ENSMUST00000122465 Gm12152-001 processed_pseudogene Mus_musculus 0 228
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 2e-39 167
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 1e-16 92

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