C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438210 RP3-342P20.2-001 ENSG00000228477 9606 + 1:39962680-39963404 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000438210
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000438210 0.089±0.00 0.192±0.00 0.079±0.01 0.673±0.00 0.136±0.04 0.029±0.00 0.134±0.00 0.515±0.00 1.214±0.07 0.055±0.00 0.331±0.20 0.202±0.11 0.271±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JK CIL_0004JK_0003 CGP 1:39895426-39969968

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 787
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 787
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 787
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 0 787
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 0 787
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 780
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 780
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 776
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 0 776
ENSMUST00000152407 Rps2-003 protein_coding Mus_musculus 0 776
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 771
ENSMUST00000075898 Gm5921-001 processed_pseudogene Mus_musculus 0 765
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 763
ENSMUST00000186517 RP23-128A11.3-001 processed_pseudogene Mus_musculus 0 754
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 752
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 752
ENSMUST00000121713 Gm10420-001 processed_pseudogene Mus_musculus 0 749
ENSMUST00000120203 Gm12933-001 processed_pseudogene Mus_musculus 0 741
ENSMUST00000090257 Gm8225-201 protein_coding Mus_musculus 0 739
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 736
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 736
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 736
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 732
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 728
ENSMUST00000121190 Gm7860-001 processed_pseudogene Mus_musculus 0 725
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 717
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 712
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 686
ENSMUST00000139570 Gm10653-001 transcribed_processed_pseudogene Mus_musculus 0 684
ENSMUST00000156423 Gm10653-003 processed_transcript Mus_musculus 0 684
ENSMUST00000132250 Gm10653-002 processed_transcript Mus_musculus 0 684
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 662
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 662
ENSMUST00000121414 Rps2-ps9-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000122809 Rps2-004 retained_intron Mus_musculus 0 638
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000120626 Gm12922-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000121977 Rps2-ps4-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000129580 Rps2-005 retained_intron Mus_musculus 0 547
ENSMUST00000190239 RP23-16N14.5-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000183369 Gm18014-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000117941 Gm14276-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000129984 Rps2-007 retained_intron Mus_musculus 0 411
ENSMUST00000140747 Gm16305-001 unprocessed_pseudogene Mus_musculus 0 398
ENSMUST00000165577 Gm17150-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000187136 RP23-258M15.4-001 processed_pseudogene Mus_musculus 0 307
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 0 198
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 2e-24 117

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