C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090821 Sema6c-004 ENSMUSG00000038777 10090 + 3:95160505-95174024 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090821
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090821 1.247±0.01 0.833±0.32 0.440±0.00 17.676±2.12 1.836±0.26 0.437±0.14 0.153±0.03 0.590±0.10 13.764±2.18 1.670±0.30 1.022±1.13 3.407±1.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000581 CIL_000581_0003 CGP 3:95139521-95174024

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005886 IEA plasma membrane
GO:0007399 IEA nervous system development
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030215 IPI semaphorin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341697 SEMA6C-004 protein_coding Homo_sapiens 0 3088
ENST00000368912 SEMA6C-003 protein_coding Homo_sapiens 0 1339
ENST00000368913 SEMA6C-002 protein_coding Homo_sapiens 0 2305
ENST00000368914 SEMA6C-001 protein_coding Homo_sapiens 0 3088
ENST00000464018 SEMA6C-006 processed_transcript Homo_sapiens 0 375
ENST00000479820 SEMA6C-005 processed_transcript Homo_sapiens 0 195
ENST00000485745 SEMA6C-008 processed_transcript Homo_sapiens 1e-27 126
ENST00000613223 SEMA6C-201 protein_coding Homo_sapiens 0 1559
ENST00000621728 SEMA6C-202 protein_coding Homo_sapiens 0 1576

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