C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ryanodine receptor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091818 Ryr3-201 ENSMUSG00000057378 10090 - 2:112631380-113030331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLungMuscleOvaryENSMUST00000091818
Transcript ID Brain Colon Heart Lung Muscle Ovary
ENSMUST00000091818 0.674±0.13 0.266±0.12 0.126±0.00 0.085±0.00 0.174±0.00 0.404±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HM CIL_0003HM_0002 CGP 2:112479171-112634573
CIL_000222 CIL_000222_0002 CGP 2:112492964-113217096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0006816 IEA calcium ion transport
GO:0006874 IMP cellular calcium ion homeostasis
GO:0006941 IMP striated muscle contraction
GO:0015278 IEA calcium-release channel activity
GO:0016021 IEA integral component of membrane
GO:0030314 IDA junctional membrane complex
GO:0033017 IDA sarcoplasmic reticulum membrane
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048763 IEA calcium-induced calcium release activity
GO:0051481 IEA negative regulation of cytosolic calcium ion concentration
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000014749 ryr1a-201 protein_coding Danio_rerio 0 723
ENSDART00000137089 ryr1a-001 protein_coding Danio_rerio 0 723
ENSDART00000122570 protein_coding Danio_rerio 0 545
ENST00000389232 RYR3-001 protein_coding Homo_sapiens 0 18780
ENST00000415757 RYR3-002 protein_coding Homo_sapiens 0 18680
ENST00000558060 RYR3-004 retained_intron Homo_sapiens 0 470
ENST00000559333 RYR3-007 processed_transcript Homo_sapiens 0 501
ENST00000559917 RYR3-006 processed_transcript Homo_sapiens 0 833
ENST00000560791 RYR3-005 retained_intron Homo_sapiens 0 579
ENST00000622037 RYR3-201 protein_coding Homo_sapiens 0 18730

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