C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SOGA family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092629 Soga3-201 ENSMUSG00000038916 10090 + 10:29143996-29199630 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092629
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092629 0.017±0.01 0.945±0.30 0.122±0.01 27.618±4.25 0.018±0.01 0.411±0.06 0.021±0.02 0.039±0.01 0.033±0.03 0.022±0.00 0.011±0.00 0.029±0.01 0.076±0.09 0.051±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001EL CIL_0001EL_0003 CGP 10:29143996-29230779

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005615 IEA extracellular space
GO:0008150 ND biological_process
GO:0010506 IEA regulation of autophagy
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000464495 SOGA3-003 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000465909 SOGA3-003 protein_coding Homo_sapiens 0 3583
ENST00000473298 SOGA3-002 nonsense_mediated_decay Homo_sapiens 0 1262
ENST00000474293 SOGA3-004 processed_transcript Homo_sapiens 0 568
ENST00000481848 SOGA3-001 nonsense_mediated_decay Homo_sapiens 0 3624
ENST00000525778 SOGA3-001 protein_coding Homo_sapiens 0 3642
ENST00000556132 SOGA3-201 protein_coding Homo_sapiens 0 3624

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