C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008CD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1400 VISTA 9606 8:133368805-133970973
GeneTranscriptPositionBiotype
ENSG00000008513 (ST3GAL1)
ST3 beta-galactoside alpha-2,3-sialyltransferase 1 		ENST00000399640 (ST3GAL1-201) 133454848-133571940 protein_coding
ENST00000517668 (ST3GAL1-005) 133464931-133571925 protein_coding
ENST00000518298 (ST3GAL1-002) 133476029-133571888 processed_transcript
ENST00000519435 (ST3GAL1-006) 133476029-133570379 processed_transcript
ENST00000519924 (ST3GAL1-010) 133475877-133489700 protein_coding
ENST00000520020 (ST3GAL1-007) 133476143-133499421 processed_transcript
ENST00000521180 (ST3GAL1-001) 133454853-133571925 protein_coding
ENST00000521627 (ST3GAL1-014) 133488082-133489633 processed_transcript
ENST00000522204 (ST3GAL1-012) 133465642-133475934 retained_intron
ENST00000522285 (ST3GAL1-004) 133566982-133571746 processed_transcript
ENST00000522652 (ST3GAL1-003) 133458945-133571849 protein_coding
ENST00000522873 (ST3GAL1-013) 133476523-133571926 processed_transcript
ENST00000523634 (ST3GAL1-011) 133475809-133489640 protein_coding
ENST00000523854 (ST3GAL1-008) 133464778-133499383 protein_coding
ENST00000523855 (ST3GAL1-009) 133475884-133499361 protein_coding
ENSG00000225259 (ST13P6)
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 6 		ENST00000522430 (ST13P6-001) 133408006-133409107 processed_pseudogene
ENSG00000253165 (CTD-2309H9.3)
 ENST00000517380 (CTD-2309H9.3-001) 133775551-133777352 lincRNA
ENSG00000253561 (CTD-2588J1.1)
 ENST00000517695 (CTD-2588J1.1-001) 133771409-133814537 lincRNA
ENSG00000253593 (RP11-157E21.1)
 ENST00000520149 (RP11-157E21.1-001) 133886496-133902407 lincRNA
ENSG00000253916 (CTD-2309H9.2)
 ENST00000523429 (CTD-2309H9.2-001) 133755845-133756646 processed_pseudogene
ENSG00000254313 (CTD-2309H9.4)
 ENST00000523552 (CTD-2309H9.4-001) 133786093-133786268 processed_pseudogene
ENSG00000261220 (RP11-629O1.2)
 ENST00000561761 (RP11-629O1.2-001) 133573183-133573861 lincRNA
ENSG00000271240 (RP11-157E21.2)
 ENST00000605278 (RP11-157E21.2-001) 133962992-133963259 processed_pseudogene
ENSG00000276193 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000611670 (Metazoa_SRP.1-359) 133668420-133668701 misc_RNA
CIL_0008CD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1400 VISTA 10090 15:66945066-67547938
GeneTranscriptPositionBiotype
ENSMUSG00000005125 (Ndrg1)
N-myc downstream regulated gene 1 		ENSMUST00000005256 (Ndrg1-001) 66929321-66969640 protein_coding
ENSMUST00000163496 (Ndrg1-010) 66943136-66967940 protein_coding
ENSMUST00000164070 (Ndrg1-006) 66946537-66969640 protein_coding
ENSMUST00000164675 (Ndrg1-004) 66942012-66969639 nonsense_mediated_decay
ENSMUST00000165966 (Ndrg1-007) 66930866-66934469 retained_intron
ENSMUST00000166420 (Ndrg1-009) 66931077-66969639 protein_coding
ENSMUST00000167817 (Ndrg1-013) 66943079-66948479 protein_coding
ENSMUST00000168542 (Ndrg1-008) 66943074-66969639 nonsense_mediated_decay
ENSMUST00000168979 (Ndrg1-003) 66943079-66967925 protein_coding
ENSMUST00000170903 (Ndrg1-011) 66943129-66969616 protein_coding
ENSMUST00000171266 (Ndrg1-005) 66943097-66969595 nonsense_mediated_decay
ENSMUST00000171569 (Ndrg1-002) 66934158-66969639 retained_intron
ENSMUST00000172447 (Ndrg1-012) 66943092-66969616 nonsense_mediated_decay
ENSMUSG00000013846 (St3gal1)
ST3 beta-galactoside alpha-2,3-sialyltransferase 1 		ENSMUST00000092640 (St3gal1-201) 67102875-67113992 protein_coding
ENSMUSG00000102069 (RP23-163N4.1)
RIKEN cDNA 1700012I11 gene 		ENSMUST00000187233 (RP23-163N4.1-001) 67226769-67377094 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008CD_0001ENSG00000008513ENST00000399640ENST00000521180ENST00000522652ENSG00000225259ENST00000522430ENSG00000253165ENST00000517380ENSG00000253561ENST00000517695ENSG00000253593ENST00000520149ENSG00000253916ENST00000523429ENSG00000254313ENST00000523552ENSG00000261220ENST00000561761ENSG00000271240ENST00000605278ENSG00000276193ENST00000611670CIL_0008CD_0002ENSMUSG00000005125ENSMUST00000005256ENSMUST00000168979ENSMUST00000171569ENSMUSG00000013846ENSMUST00000092640ENSMUSG00000102069ENSMUST00000187233
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000008513 ENST00000399640 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.597±0.00 N/A N/A N/A N/A
ENST00000517668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521180 1.271±0.00 2.222±0.00 N/A 0.657±0.00 0.869±0.01 1.894±0.00 10.168±0.00 1.369±0.00 N/A N/A 0.851±0.00 2.959±2.62 3.837±0.30 0.210±0.00
ENST00000521627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522652 N/A N/A 2.494±0.00 N/A 1.303±0.00 0.942±0.00 2.910±0.00 8.603±0.00 3.394±0.00 N/A N/A 1.563±0.00 N/A N/A
ENST00000522873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225259 ENST00000522430 0.049±0.00 0.079±0.00 N/A 0.027±0.00 0.108±0.00 0.130±0.06 0.032±0.02 0.027±0.00 N/A 0.099±0.06 0.071±0.00 0.034±0.01 0.061±0.00 0.029±0.02
ENSG00000253165 ENST00000517380 N/A 0.030±0.00 N/A 0.079±0.00 0.015±0.00 N/A N/A N/A 0.013±0.00 N/A N/A N/A 0.037±0.01 0.027±0.00
ENSG00000253561 ENST00000517695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.108±0.00
ENSG00000253593 ENST00000520149 N/A N/A N/A N/A N/A N/A N/A 0.351±0.00 N/A N/A N/A N/A N/A 0.085±0.00
ENSG00000253916 ENST00000523429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00
ENSG00000254313 ENST00000523552 N/A N/A N/A 0.091±0.00 N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000261220 ENST00000561761 0.702±0.00 2.377±0.00 N/A 0.292±0.06 0.565±0.00 N/A 0.519±0.42 0.355±0.00 0.327±0.00 0.776±0.00 0.817±0.00 0.593±0.44 0.513±0.20 0.386±0.03
ENSG00000271240 ENST00000605278 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276193 ENST00000611670 N/A 0.188±0.00 N/A 0.278±0.00 N/A N/A 0.060±0.00 0.065±0.00 N/A 1.317±0.00 N/A N/A N/A 0.058±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005125 ENSMUST00000005256 8.598±4.88 8.689±5.40 21.621±1.66 6.281±4.37 5.381±0.82 9.232±0.00 11.361±0.26 238.069±124.61 25.150±32.35 1.710±0.00 4.836±1.91 9.686±4.19 77.375±56.08 0.674±0.11
ENSMUST00000163496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168979 N/A 19.842±4.28 N/A N/A 30.017±9.27 N/A 12.603±2.11 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.876±0.25 N/A N/A
ENSMUST00000172447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000013846 ENSMUST00000092640 N/A N/A 5.394±0.00 1.782±0.61 20.604±0.00 3.720±1.70 4.025±0.00 4.345±0.00 4.074±3.59 18.977±3.79 N/A 6.197±3.92 5.332±4.10 0.486±0.26
ENSMUSG00000102069 ENSMUST00000187233 N/A N/A 0.056±0.05 0.008±0.00 N/A N/A N/A 0.040±0.00 0.008±0.00 0.066±0.01 N/A N/A N/A 0.410±0.10

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