C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, H+ transporting, lysosomal V0 subunit A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092663 Atp6v0a1-003 ENSMUSG00000019302 10090 + 11:101011821-101063719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092663
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092663 27.005±13.00 36.499±4.89 20.038±8.02 34.272±22.80 27.998±9.95 23.027±5.80 15.832±1.73 12.157±6.88 16.761±7.05 33.934±7.80 9.752±2.67 22.396±9.73 25.990±13.90 4.009±1.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046F CIL_00046F_0002 CGP 11:100956733-101063719
CIL_00046D CIL_00046D_0002 CGP 11:101009452-101077672

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000220 IEA vacuolar proton-transporting V-type ATPase, V0 domain
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0015078 IEA hydrogen ion transmembrane transporter activity
GO:0015991 IEA ATP hydrolysis coupled proton transport
GO:0016021 IEA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0033179 IEA proton-transporting V-type ATPase, V0 domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041714 atp6v0a1b-001 protein_coding Danio_rerio 0 1083
ENST00000264649 ATP6V0A1-004 protein_coding Homo_sapiens 0 3037
ENST00000265686 TCIRG1-001 protein_coding Homo_sapiens 3e-17 95
ENST00000343619 ATP6V0A1-006 protein_coding Homo_sapiens 0 3051
ENST00000393829 ATP6V0A1-001 protein_coding Homo_sapiens 0 3129
ENST00000525724 TCIRG1-009 retained_intron Homo_sapiens 2e-17 95
ENST00000532635 TCIRG1-016 protein_coding Homo_sapiens 3e-17 95
ENST00000533005 TCIRG1-004 retained_intron Homo_sapiens 2e-17 95
ENST00000537728 ATP6V0A1-003 protein_coding Homo_sapiens 0 2531
ENST00000544137 ATP6V0A1-201 protein_coding Homo_sapiens 0 1666
ENST00000585525 ATP6V0A1-005 protein_coding Homo_sapiens 0 2453
ENST00000585828 ATP6V0A1-007 retained_intron Homo_sapiens 0 656
ENST00000586201 ATP6V0A1-025 protein_coding Homo_sapiens 0 448
ENST00000587375 ATP6V0A1-018 retained_intron Homo_sapiens 0 448
ENST00000587510 ATP6V0A1-023 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000587824 ATP6V0A1-012 protein_coding Homo_sapiens 0 580
ENST00000587882 ATP6V0A1-019 retained_intron Homo_sapiens 0 534
ENST00000588138 ATP6V0A1-022 protein_coding Homo_sapiens 0 444
ENST00000588629 ATP6V0A1-002 retained_intron Homo_sapiens 0 604
ENST00000588806 ATP6V0A1-024 retained_intron Homo_sapiens 0 442
ENST00000588901 ATP6V0A1-015 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000589213 ATP6V0A1-013 protein_coding Homo_sapiens 0 396
ENST00000589727 ATP6V0A1-014 protein_coding Homo_sapiens 0 671
ENST00000589759 ATP6V0A1-020 processed_transcript Homo_sapiens 0 556
ENST00000592324 ATP6V0A1-017 protein_coding Homo_sapiens 0 568

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