C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265686 TCIRG1-001 ENSG00000110719 9606 + 11:68039016-68050895 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000265686
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000265686 14.426±0.00 15.305±0.00 10.073±0.00 9.474±0.00 2.383±0.00 4.945±0.00 3.542±0.00 9.719±6.36 15.684±0.00 8.889±4.37

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000220 IEA vacuolar proton-transporting V-type ATPase, V0 domain
GO:0005215 TAS transporter activity
GO:0005739 IEA mitochondrion
GO:0005765 IDA lysosomal membrane
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006879 TAS cellular iron ion homeostasis
GO:0006968 TAS cellular defense response
GO:0008284 TAS positive regulation of cell proliferation
GO:0008286 TAS insulin receptor signaling pathway
GO:0010008 TAS endosome membrane
GO:0015078 IEA hydrogen ion transmembrane transporter activity
GO:0015991 IEA ATP hydrolysis coupled proton transport
GO:0015992 TAS proton transport
GO:0016324 IDA apical plasma membrane
GO:0030670 TAS phagocytic vesicle membrane
GO:0033179 IEA proton-transporting V-type ATPase, V0 domain
GO:0033572 TAS transferrin transport
GO:0051701 TAS interaction with host
GO:0055085 TAS transmembrane transport
GO:0090382 TAS phagosome maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001801 Tcirg1-001 protein_coding Mus_musculus 0 2298
ENSMUST00000145791 Tcirg1-003 protein_coding Mus_musculus 0 2298
ENSMUST00000126070 Tcirg1-002 protein_coding Mus_musculus 0 2296
ENSMUST00000135070 Tcirg1-004 nonsense_mediated_decay Mus_musculus 0 1504
ENSMUST00000131327 Tcirg1-005 retained_intron Mus_musculus 0 867
ENSMUST00000122885 Tcirg1-008 nonsense_mediated_decay Mus_musculus 0 771
ENSMUST00000132164 Tcirg1-011 nonsense_mediated_decay Mus_musculus 0 562
ENSMUST00000159824 Tcirg1-013 retained_intron Mus_musculus 0 545
ENSMUST00000125792 Tcirg1-007 retained_intron Mus_musculus 0 427
ENSMUST00000127308 Tcirg1-006 retained_intron Mus_musculus 0 270
ENSMUST00000162688 Tcirg1-012 retained_intron Mus_musculus 0 246
ENSDART00000017646 atp6v0a1a-001 protein_coding Danio_rerio 2e-23 115
ENSDART00000054119 atp6v0a2a-201 protein_coding Danio_rerio 1e-21 110
ENSDART00000140476 atp6v0a2a-001 protein_coding Danio_rerio 1e-21 110
ENSMUST00000168757 Atp6v0a1-201 protein_coding Mus_musculus 3e-17 95
ENSMUST00000139857 Atp6v0a1-009 processed_transcript Mus_musculus 3e-17 95
ENSMUST00000154896 Atp6v0a1-004 processed_transcript Mus_musculus 3e-17 95
ENSMUST00000092663 Atp6v0a1-003 protein_coding Mus_musculus 3e-17 95
ENSMUST00000103110 Atp6v0a1-002 protein_coding Mus_musculus 3e-17 95
ENSMUST00000044721 Atp6v0a1-001 protein_coding Mus_musculus 3e-17 95

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