C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093033 Capn9-001 ENSMUSG00000031981 10090 + 8:124576111-124618731 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000093033
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000093033 0.119±0.04 0.099±0.07 0.014±0.01 0.017±0.00 0.050±0.01 14.917±3.54 0.032±0.01 0.023±0.01 0.009±0.00 0.100±0.03 0.023±0.00 0.116±0.06 0.040±0.02 0.240±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A0 CIL_0008A0_0002 VISTA 8:123980149-124582109
CIL_0007WK CIL_0007WK_0002 VISTA 8:124343702-124945898
CIL_000615 CIL_000615_0002 CGP 8:124556534-124618731
CIL_000616 CIL_000616_0002 CGP 8:124576111-124663369

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005737 IBA cytoplasm
GO:0006508 IBA proteolysis
GO:0007586 IEA digestion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000271971 CAPN9-001 protein_coding Homo_sapiens 0 1934
ENST00000354537 CAPN9-002 protein_coding Homo_sapiens 0 870
ENST00000366666 CAPN9-201 protein_coding Homo_sapiens 0 1544
ENST00000366872 CAPN8-201 protein_coding Homo_sapiens 7.00649e-43 180
ENST00000366873 CAPN8-001 protein_coding Homo_sapiens 7.00649e-43 180
ENST00000419193 CAPN8-002 protein_coding Homo_sapiens 3.9937e-43 180
ENST00000465098 CAPN8-004 protein_coding Homo_sapiens 2e-29 134
ENST00000467384 CAPN8-003 nonsense_mediated_decay Homo_sapiens 9.99995e-41 171
ENST00000525760 CAPN8-009 retained_intron Homo_sapiens 8.99998e-41 171

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