C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic FMR1 interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093166 Cyfip2-001 ENSMUSG00000020340 10090 - 11:46193855-46312294 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000093166
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000093166 0.657±0.50 16.684±3.78 3.195±0.77 43.008±41.48 4.588±2.60 1.132±0.54 8.937±0.97 25.471±1.24 1.185±0.78 2.894±0.93 1.038±0.58 12.058±7.14 4.592±1.86 0.196±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094M CIL_00094M_0002 VISTA 11:45901358-46503267
CIL_00023S CIL_00023S_0002 CGP 11:46193850-46312859

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0006915 ISS apoptotic process
GO:0016337 ISS single organismal cell-cell adhesion
GO:0030054 IEA cell junction
GO:0043005 ISS neuron projection
GO:0045202 ISA synapse
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000149396 cyfip2-001 protein_coding Danio_rerio 0 3441
ENSDART00000020014 cyfip2-201 protein_coding Danio_rerio 0 3428
ENSDART00000123607 cyfip2-202 protein_coding Danio_rerio 0 3428
ENSDART00000065127 cyfip1-001 protein_coding Danio_rerio 0 2224
ENSDART00000104233 cyfip1-201 protein_coding Danio_rerio 0 2169
ENST00000435847 CYFIP2-006 protein_coding Homo_sapiens 0 4071
ENST00000518511 CYFIP2-027 retained_intron Homo_sapiens 0 243
ENST00000518555 CYFIP2-019 retained_intron Homo_sapiens 0 239
ENST00000519663 CYFIP2-011 retained_intron Homo_sapiens 0 979
ENST00000520424 CYFIP2-020 retained_intron Homo_sapiens 0 719
ENST00000520960 CYFIP2-018 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000521420 CYFIP2-001 protein_coding Homo_sapiens 0 4798
ENST00000522463 CYFIP2-007 protein_coding Homo_sapiens 0 4048
ENST00000522637 CYFIP2-012 nonsense_mediated_decay Homo_sapiens 0 444
ENST00000522892 CYFIP2-021 retained_intron Homo_sapiens 0 394
ENST00000523383 CYFIP2-022 retained_intron Homo_sapiens 0 979
ENST00000541131 CYFIP2-201 protein_coding Homo_sapiens 0 5192
ENST00000561263 CYFIP1-015 protein_coding Homo_sapiens 0 388
ENST00000610365 CYFIP1-003 protein_coding Homo_sapiens 0 2697
ENST00000611075 CYFIP2-014 protein_coding Homo_sapiens 0 791
ENST00000611925 CYFIP2-015 protein_coding Homo_sapiens 0 920
ENST00000616178 CYFIP2-003 protein_coding Homo_sapiens 0 2868
ENST00000617556 CYFIP1-004 protein_coding Homo_sapiens 0 1384
ENST00000617629 CYFIP2-013 protein_coding Homo_sapiens 0 1227
ENST00000617928 CYFIP1-001 protein_coding Homo_sapiens 0 2697
ENST00000618329 CYFIP2-002 protein_coding Homo_sapiens 0 5155
ENST00000619348 CYFIP1-005 retained_intron Homo_sapiens 0 928
ENST00000620254 CYFIP2-008 protein_coding Homo_sapiens 0 5240
ENST00000620969 CYFIP2-202 protein_coding Homo_sapiens 0 2351
ENST00000621516 CYFIP2-016 nonsense_mediated_decay Homo_sapiens 0 712
ENST00000622696 CYFIP2-004 retained_intron Homo_sapiens 0 1160

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