C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trichoplein, keratin filament binding
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094441 Tchp-001 ENSMUSG00000002486 10090 + 5:114707760-114722327 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094441
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094441 2.035±0.60 2.742±0.98 3.591±0.55 4.388±1.99 1.674±0.53 1.956±1.05 0.847±0.23 1.818±0.22 1.943±1.28 2.493±0.80 1.050±0.30 2.957±1.17 3.779±1.22 31.519±14.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JH CIL_0001JH_0003 CGP 5:114669403-114722327
CIL_0001GG CIL_0001GG_0003 CGP 5:114707760-114775517

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0005739 ISS mitochondrion
GO:0005813 IEA centrosome
GO:0005886 ISS plasma membrane
GO:0006915 ISS apoptotic process
GO:0030308 ISS negative regulation of cell growth
GO:0045095 ISS keratin filament
GO:0045179 ISS apical cortex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312777 TCHP-003 protein_coding Homo_sapiens 0 1212
ENST00000405876 TCHP-001 protein_coding Homo_sapiens 0 1212
ENST00000537880 TCHP-005 retained_intron Homo_sapiens 5e-40 171
ENST00000544838 TCHP-006 nonsense_mediated_decay Homo_sapiens 0 1212
ENST00000549550 TCHP-008 retained_intron Homo_sapiens 0 420
ENST00000551627 TCHP-009 retained_intron Homo_sapiens 0 424

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