C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001JH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061921-ENSDARG00000035605 CGP 7955 5:21634156-21662580
GeneTranscriptPositionBiotype
ENSDARG00000035605 (tchp)
trichoplein, keratin filament binding 		ENSDART00000051614 (tchp-001) 21651122-21662580 protein_coding
ENSDARG00000061921 (gltpa)
glycolipid transfer protein a 		ENSDART00000088904 (gltpa-001) 21634156-21645094 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001JH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139433-ENSG00000139437 CGP 9606 12:109850943-109983841
GeneTranscriptPositionBiotype
ENSG00000139433 (GLTP)
glycolipid transfer protein 		ENST00000318348 (GLTP-001) 109850943-109880488 protein_coding
ENST00000536390 (GLTP-003) 109852665-109880383 nonsense_mediated_decay
ENST00000537066 (GLTP-002) 109855618-109880378 nonsense_mediated_decay
ENST00000540772 (GLTP-005) 109852545-109880325 protein_coding
ENST00000544393 (GLTP-004) 109852261-109880421 protein_coding
ENST00000617457 (GLTP-201) 109852555-109880374 protein_coding
ENSG00000139436 (GIT2)
G protein-coupled receptor kinase interacting ArfGAP 2 		ENST00000320063 (GIT2-007) 109948062-109996291 protein_coding
ENST00000354574 (GIT2-201) 109929802-109996389 protein_coding
ENST00000355312 (GIT2-001) 109929792-109996224 protein_coding
ENST00000361006 (GIT2-004) 109929804-109996304 protein_coding
ENST00000457474 (GIT2-010) 109929804-109996295 protein_coding
ENST00000546613 (GIT2-017) 109933096-109939022 processed_transcript
ENST00000547267 (GIT2-014) 109983608-109992088 retained_intron
ENST00000547694 (GIT2-016) 109952680-109959958 retained_intron
ENST00000547815 (GIT2-006) 109947322-109996296 protein_coding
ENST00000548000 (GIT2-018) 109933112-109943021 processed_transcript
ENST00000548643 (GIT2-012) 109980952-109996368 retained_intron
ENST00000548655 (GIT2-019) 109934037-109940501 processed_transcript
ENST00000549999 (GIT2-009) 109934040-109954550 retained_intron
ENST00000550186 (GIT2-005) 109933057-109996224 protein_coding
ENST00000550480 (GIT2-020) 109938535-109939685 retained_intron
ENST00000551209 (GIT2-011) 109932978-109996224 protein_coding
ENST00000551455 (GIT2-002) 109950694-109996373 retained_intron
ENST00000551721 (GIT2-015) 109961651-109983180 retained_intron
ENST00000552978 (GIT2-023) 109933038-109938977 retained_intron
ENST00000553118 (GIT2-008) 109932615-109996389 protein_coding
ENSG00000241413 (RN7SL441P)
RNA, 7SL, cytoplasmic 441, pseudogene 		ENST00000492388 (RN7SL441P-201) 109866214-109866509 misc_RNA
ENSG00000249094 (RP1-7G5.6)
 ENST00000446473 (RP1-7G5.6-001) 109880676-109888467 lincRNA
ENSG00000256351 (RP1-7G5.5)
 ENST00000536310 (RP1-7G5.5-001) 109859767-109860420 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001JH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000011884-ENSMUSG00000002486 CGP 10090 5:114669403-114722327
GeneTranscriptPositionBiotype
ENSMUSG00000002486 (Tchp)
trichoplein, keratin filament binding 		ENSMUST00000094441 (Tchp-001) 114707760-114722327 protein_coding
ENSMUST00000112199 (Tchp-003) 114714961-114722327 protein_coding
ENSMUST00000124242 (Tchp-002) 114707864-114722327 retained_intron
ENSMUST00000128625 (Tchp-006) 114717560-114718719 retained_intron
ENSMUST00000131679 (Tchp-005) 114714635-114719689 protein_coding
ENSMUST00000152999 (Tchp-004) 114707819-114709440 processed_transcript
ENSMUSG00000011884 (Gltp)
glycolipid transfer protein 		ENSMUST00000012028 (Gltp-001) 114669403-114690984 protein_coding
ENSMUST00000112212 (Gltp-003) 114670228-114690908 protein_coding
ENSMUST00000112214 (Gltp-002) 114670083-114690941 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JH_0001ENSDARG00000035605ENSDART00000051614ENSDARG00000061921ENSDART00000088904CIL_0001JH_0002ENSG00000139433ENST00000318348ENST00000536390ENST00000537066ENST00000540772ENST00000544393ENST00000617457ENSG00000139436ENST00000320063ENST00000354574ENST00000355312ENST00000361006ENST00000457474ENST00000546613ENST00000547267ENST00000547694ENST00000547815ENST00000548000ENST00000548643ENST00000548655ENST00000549999ENST00000550186ENST00000550480ENST00000551209ENST00000551455ENST00000551721ENST00000552978ENST00000553118ENSG00000241413ENST00000492388ENSG00000249094ENST00000446473ENSG00000256351ENST00000536310CIL_0001JH_0003ENSMUSG00000002486ENSMUST00000094441ENSMUST00000112199ENSMUST00000124242ENSMUST00000128625ENSMUST00000131679ENSMUST00000152999ENSMUSG00000011884ENSMUST00000012028ENSMUST00000112212ENSMUST00000112214
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JH_0001ENSDARG00000035605ENSDART00000051614ENSDARG00000061921ENSDART00000088904CIL_0001JH_0002ENSG00000139433ENST00000318348ENST00000544393ENSG00000139436ENST00000320063ENST00000354574ENST00000355312ENST00000361006ENST00000457474ENST00000547815ENST00000550186ENST00000551209ENST00000551455ENST00000553118ENSG00000241413ENST00000492388ENSG00000249094ENST00000446473ENSG00000256351ENST00000536310CIL_0001JH_0003ENSMUSG00000002486ENSMUST00000094441ENSMUST00000112199ENSMUST00000124242ENSMUST00000152999ENSMUSG00000011884ENSMUST00000012028ENSMUST00000112214
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000035605 ENSDART00000051614 N/A N/A N/A 3.015±1.72 N/A N/A 1.564±0.87 2.124±1.19 0.142±0.00 N/A 0.637±0.00 N/A N/A N/A
ENSDARG00000061921 ENSDART00000088904 N/A N/A N/A N/A N/A N/A 1.087±0.31 3.715±0.31 0.561±0.00 N/A 1.266±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139433 ENST00000318348 21.132±0.00 12.811±0.00 1.470±0.00 11.649±5.84 7.861±5.18 6.224±2.62 4.769±3.63 9.773±8.75 4.289±0.85 10.960±8.78 4.394±3.96 10.433±5.16 9.019±4.44 7.200±3.01
ENST00000536390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.577±0.00 6.540±0.00 N/A 4.705±0.00
ENST00000617457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139436 ENST00000320063 N/A N/A N/A N/A N/A 1.903±0.00 N/A N/A N/A 2.858±0.00 N/A 2.551±0.00 N/A N/A
ENST00000354574 N/A N/A N/A N/A 3.097±0.00 1.176±0.00 2.501±0.00 2.105±0.00 1.105±0.00 N/A N/A 2.843±0.00 1.608±0.00 N/A
ENST00000355312 5.669±0.00 8.025±0.00 2.016±0.00 1.812±0.00 2.493±1.26 2.260±0.00 2.963±1.97 4.211±0.00 1.414±0.10 3.101±1.17 7.318±0.00 5.315±2.16 8.059±0.59 2.290±0.00
ENST00000361006 N/A N/A N/A 0.704±0.00 1.080±0.00 2.041±0.36 N/A N/A N/A N/A N/A N/A N/A 6.191±0.50
ENST00000457474 N/A N/A N/A 1.813±0.10 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547815 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.029±0.00 N/A N/A N/A N/A
ENST00000548000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550186 N/A N/A N/A N/A N/A N/A N/A 2.020±0.00 N/A N/A N/A N/A N/A N/A
ENST00000550480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551209 N/A N/A N/A N/A N/A N/A N/A N/A 3.607±0.00 N/A 2.969±0.00 N/A N/A N/A
ENST00000551455 N/A N/A 3.983±0.00 N/A 4.516±0.00 3.342±0.00 2.104±0.00 1.723±0.00 N/A N/A N/A 3.400±0.00 N/A N/A
ENST00000551721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.923±0.00
ENSG00000241413 ENST00000492388 N/A 0.337±0.00 N/A 0.238±0.00 N/A 0.472±0.00 N/A 0.056±0.00 N/A N/A 0.348±0.00 0.956±0.33 N/A 0.322±0.04
ENSG00000249094 ENST00000446473 0.122±0.00 0.174±0.00 N/A 0.231±0.00 0.210±0.00 0.071±0.00 0.070±0.00 0.178±0.00 N/A 0.045±0.00 0.236±0.00 0.101±0.00 0.064±0.00 0.392±0.19
ENSG00000256351 ENST00000536310 N/A 0.275±0.00 N/A 0.517±0.28 0.114±0.00 0.083±0.00 N/A 0.060±0.00 0.843±0.00 0.025±0.00 N/A 0.215±0.00 N/A 0.239±0.21
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002486 ENSMUST00000094441 2.035±0.60 2.742±0.98 3.591±0.55 4.388±1.99 1.674±0.53 1.956±1.05 0.847±0.23 1.818±0.22 1.943±1.28 2.493±0.80 1.050±0.30 2.957±1.17 3.779±1.22 31.519±14.37
ENSMUST00000112199 2.776±1.06 3.456±1.34 4.001±0.31 3.561±0.22 3.573±1.23 1.876±0.58 1.372±0.09 1.565±0.17 1.733±1.04 1.716±0.17 0.483±0.05 2.649±1.25 1.789±0.37 15.144±1.73
ENSMUST00000124242 N/A N/A N/A 0.828±0.00 N/A N/A N/A N/A N/A N/A 0.304±0.10 1.020±0.00 0.907±0.22 N/A
ENSMUST00000128625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152999 N/A 6.232±1.10 N/A N/A N/A 2.631±0.00 1.678±0.12 N/A 1.002±0.16 N/A N/A N/A N/A N/A
ENSMUSG00000011884 ENSMUST00000012028 30.563±9.41 25.357±6.43 87.182±10.66 7.588±4.30 28.809±11.22 42.801±4.77 10.419±2.60 25.299±2.67 9.290±7.83 56.455±7.51 4.007±0.24 19.485±5.68 20.562±15.22 3.057±1.55
ENSMUST00000112212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112214 17.829±3.52 47.404±11.71 N/A 3.636±0.00 35.367±3.87 40.410±9.94 3.804±1.29 7.657±0.00 0.586±0.08 33.473±4.37 N/A 18.840±4.53 N/A 1.384±0.00

Loading