C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S1 RNA binding domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095187 Srbd1-201 ENSMUSG00000024135 10090 - 17:85984665-86145175 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095187
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095187 1.580±0.45 1.043±0.24 2.601±0.20 2.854±0.51 1.159±0.26 0.648±0.16 0.784±0.28 1.115±0.23 1.745±1.05 1.036±0.42 0.648±0.23 3.650±3.55 4.007±1.54 0.565±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KD CIL_0007KD_0002 UCNEbase 17:85172000-86036297
CIL_0000RS CIL_0000RS_0002 CGP 17:85684277-86145175
CIL_0001NP CIL_0001NP_0002 CGP 17:85984665-86657919

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0006139 IEA nucleobase-containing compound metabolic process
GO:0008150 ND biological_process
GO:0016788 IEA hydrolase activity, acting on ester bonds

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263736 SRBD1-001 protein_coding Homo_sapiens 0 2697
ENST00000475073 SRBD1-003 processed_transcript Homo_sapiens 0 300
ENST00000490133 SRBD1-002 processed_transcript Homo_sapiens 0 839

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