C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097911 Kdm4a-002 ENSMUSG00000033326 10090 - 4:118136959-118179654 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverLungMuscleOvaryPlacentaENSMUST00000097911
Transcript ID Adipose Adrenal Breast Colon Liver Lung Muscle Ovary Placenta
ENSMUST00000097911 3.188±0.00 11.698±7.73 5.337±1.22 3.319±0.49 1.895±0.05 5.654±1.46 3.048±1.30 11.628±3.06 12.453±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002F2 CIL_0002F2_0002 CGP 4:117932154-118180043

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0014898 IMP cardiac muscle hypertrophy in response to stress
GO:0035064 ISS methylated histone binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372396 KDM4A-001 protein_coding Homo_sapiens 0 3797
ENST00000463151 KDM4A-002 processed_transcript Homo_sapiens 0 1066
ENST00000472265 KDM4A-005 processed_transcript Homo_sapiens 0 309
ENST00000485249 KDM4A-003 processed_transcript Homo_sapiens 0 885
ENST00000616726 RP11-60C6.8-001 unprocessed_pseudogene Homo_sapiens 0.00000000003 73

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