C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372396 KDM4A-001 ENSG00000066135 9606 + 1:43650158-43705515 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372396
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372396 4.764±0.00 3.761±0.00 3.513±2.08 3.838±2.41 2.269±0.38 2.184±1.61 4.718±1.95 1.267±0.36 2.756±0.15 2.541±1.16 4.923±3.91 6.946±1.33 2.066±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005B7 CIL_0005B7_0002 CGP 1:43525187-43705515
CIL_0005B8 CIL_0005B8_0002 CGP 1:43650158-43931165

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0014898 IEA cardiac muscle hypertrophy in response to stress
GO:0016032 IEA viral process
GO:0016577 IDA histone demethylation
GO:0031625 IPI ubiquitin protein ligase binding
GO:0035064 IDA methylated histone binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0051864 IDA histone demethylase activity (H3-K36 specific)
GO:0055114 IEA oxidation-reduction process
GO:0070544 IDA histone H3-K36 demethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106406 Kdm4a-001 protein_coding Mus_musculus 0 3818
ENSMUST00000106403 Kdm4a-005 protein_coding Mus_musculus 0 3797
ENSMUST00000097911 Kdm4a-002 protein_coding Mus_musculus 0 3797
ENSMUST00000050288 Kdm4a-003 protein_coding Mus_musculus 0 3197
ENSDART00000065583 KDM4A (1 of 2)-201 protein_coding Danio_rerio 0 564
ENSDART00000151359 KDM4A (1 of 2)-001 protein_coding Danio_rerio 0 564
ENSMUST00000086835 Kdm4b-002 protein_coding Mus_musculus 0 477
ENSMUST00000025036 Kdm4b-001 protein_coding Mus_musculus 0 477
ENSDART00000034084 kdm4b-201 protein_coding Danio_rerio 0 468
ENSDART00000128161 kdm4b-001 protein_coding Danio_rerio 0 468
ENSMUST00000139679 Kdm4b-004 protein_coding Mus_musculus 0 316

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