C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor-binding SET-domain protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099490 Nsd1-201 ENSMUSG00000021488 10090 + 13:55209782-55318325 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099490
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099490 6.286±4.26 2.933±1.29 8.755±0.20 9.626±2.92 4.173±1.91 1.831±0.34 2.329±1.28 3.830±2.27 4.379±2.10 4.144±2.02 2.468±1.63 5.887±4.77 11.967±0.99 1.204±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0000OQ CIL_0000OQ_0003 CGP 13:55152640-55318325
CIL_0002YK CIL_0002YK_0002 CGP 13:55209782-55321980

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001702 IMP gastrulation with mouth forming second
GO:0003682 IDA chromatin binding
GO:0003712 IDA transcription cofactor activity
GO:0005634 IC nucleus
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0016571 IDA histone methylation
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0042054 IDA histone methyltransferase activity
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0050681 IEA androgen receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347982 NSD1-002 protein_coding Homo_sapiens 0 7548
ENST00000354179 NSD1-201 protein_coding Homo_sapiens 0 7635
ENST00000375350 NSD1-007 nonsense_mediated_decay Homo_sapiens 0 195
ENST00000439151 NSD1-001 protein_coding Homo_sapiens 0 8896
ENST00000503056 NSD1-009 protein_coding Homo_sapiens 0 676
ENST00000504457 NSD1-010 protein_coding Homo_sapiens 0 361
ENST00000505395 NSD1-011 protein_coding Homo_sapiens 0 342
ENST00000508029 NSD1-008 protein_coding Homo_sapiens 0 440
ENST00000508896 NSD1-004 protein_coding Homo_sapiens 0 634
ENST00000510954 NSD1-005 protein_coding Homo_sapiens 0 483
ENST00000512992 NSD1-006 retained_intron Homo_sapiens 0 523
ENST00000515735 NSD1-012 protein_coding Homo_sapiens 0 520
ENST00000602285 NSD1-014 retained_intron Homo_sapiens 0 1399

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