C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-adenosylmethionine decarboxylase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099945 Amd1-201 ENSMUSG00000075232 10090 - 10:40287458-40302188 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000099945
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000099945 5.479±2.68 2.462±0.90 32.314±0.00 8.709±3.01 9.151±2.55 4.699±1.17 9.819±2.27 5.715±0.49 9.069±7.36 5.570±0.81 4.191±2.57 9.231±3.97 4.969±1.91

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004014 IEA adenosylmethionine decarboxylase activity
GO:0006557 IEA S-adenosylmethioninamine biosynthetic process
GO:0008295 IEA spermidine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000064391 amd1-201 protein_coding Danio_rerio 0 686
ENSDART00000135919 amd1-001 protein_coding Danio_rerio 0 686
ENST00000299540 RP3-420J14.1-001 processed_pseudogene Homo_sapiens 0 592
ENST00000368876 AMD1-002 protein_coding Homo_sapiens 0 2163
ENST00000368877 AMD1-005 protein_coding Homo_sapiens 0 1808
ENST00000368882 AMD1-201 protein_coding Homo_sapiens 0 1557
ENST00000368885 AMD1-003 protein_coding Homo_sapiens 0 2815
ENST00000406493 RP3-382I10.3-001 processed_pseudogene Homo_sapiens 0 815
ENST00000412936 AMDP1-001 processed_pseudogene Homo_sapiens 0 1170
ENST00000451850 AMD1-001 nonsense_mediated_decay Homo_sapiens 0 1629
ENST00000457220 AMD1P1-001 processed_pseudogene Homo_sapiens 0 917
ENST00000465404 AMD1-004 nonsense_mediated_decay Homo_sapiens 0 1011
ENST00000508874 CTD-2210P15.2-001 processed_pseudogene Homo_sapiens 0 1314
ENST00000605729 CTD-2356P16.6-001 processed_pseudogene Homo_sapiens 0 187
ENST00000610605 AMD1-202 protein_coding Homo_sapiens 0 2163
ENST00000612642 AMD1-006 retained_intron Homo_sapiens 0 1808
ENST00000619590 AMD1-007 retained_intron Homo_sapiens 0 1321

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