C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin alpha, non-erythrocytic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100225 Sptan1-004 ENSMUSG00000057738 10090 + 2:29965680-30031445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100225
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100225 13.379±5.37 4.368±1.39 167.957±141.19 8.048±4.21 5.102±1.56 10.754±1.87 6.984±0.00 1.922±0.55 44.056±2.37 2.891±0.91 12.702±12.03 16.833±6.37 13.212±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EB CIL_0007EB_0002 CGP 2:29935426-30031451
CIL_0002LY CIL_0002LY_0003 CGP 2:29965560-30048881

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005916 IDA fascia adherens
GO:0016020 IDA membrane
GO:0016328 IDA lateral plasma membrane
GO:0030018 IDA Z disc
GO:0030507 IDA spectrin binding
GO:0030863 IDA cortical cytoskeleton
GO:0032437 IDA cuticular plate
GO:0046982 IDA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000102251 spna2-001 protein_coding Danio_rerio 0 5347
ENSDART00000102256 spna2-201 protein_coding Danio_rerio 0 4734
ENST00000358161 SPTAN1-201 protein_coding Homo_sapiens 0 5273
ENST00000372731 SPTAN1-004 protein_coding Homo_sapiens 0 9385
ENST00000372739 SPTAN1-005 protein_coding Homo_sapiens 0 9476
ENST00000461855 SPTAN1-008 processed_transcript Homo_sapiens 0 965
ENST00000472211 SPTAN1-001 processed_transcript Homo_sapiens 0 272
ENST00000475367 SPTAN1-006 processed_transcript Homo_sapiens 0 414
ENST00000491712 SPTAN1-003 processed_transcript Homo_sapiens 0 344

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