C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000502555 SGCA-004 ENSG00000108823 9606 + 17:50166009-50169979 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLiverMuscleOvaryTestisENST00000502555
Transcript ID Colon Heart Liver Muscle Ovary Testis
ENST00000502555 0.167±0.00 1.244±0.00 1.259±0.00 6.101±0.00 0.048±0.00 1.735±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219
CIL_0004X4 CIL_0004X4_0002 CGP 17:50164214-50201632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006936 IEA muscle contraction
GO:0007517 IEA muscle organ development
GO:0016012 IEA sarcoglycan complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166320 Sgca-202 protein_coding Mus_musculus 0 521
ENSMUST00000100551 Sgca-201 protein_coding Mus_musculus 0 521
ENSMUST00000103162 Sgca-001 protein_coding Mus_musculus 0 521

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