C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RING1 and YY1 binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101118 Rybp-201 ENSMUSG00000072872 10090 - 6:100228566-100287441 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101118
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101118 7.471±4.65 1.632±0.72 13.886±0.83 10.487±6.14 3.272±1.70 5.672±0.51 2.356±0.17 4.878±0.87 4.288±2.28 9.740±2.08 1.094±0.20 9.370±1.79 19.984±9.65 6.118±2.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003N4 CIL_0003N4_0003 CGP 6:99711299-100287441
CIL_00098S CIL_00098S_0002 VISTA 6:99896170-100499416
CIL_0001T9 CIL_0001T9_0003 CGP 6:100228566-100671157

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IDA DNA binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0031519 IEA PcG protein complex
GO:0035518 IEA histone H2A monoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000075497 rybpb-001 protein_coding Danio_rerio 0 276
ENST00000477973 RYBP-001 protein_coding Homo_sapiens 0 2283

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