C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RING1 and YY1 binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000477973 RYBP-001 ENSG00000163602 9606 - 3:72371825-72446918 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000477973
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000477973 4.892±0.00 3.864±0.00 1.098±0.00 3.299±2.51 3.572±0.00 4.114±3.29 1.619±1.19 2.946±1.96 2.441±0.57 7.097±4.20 0.941±0.73 4.588±3.15 6.781±1.79 7.603±1.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003N4 CIL_0003N4_0002 CGP 3:71771656-72446918
CIL_00098S CIL_00098S_0001 VISTA 3:72018994-72621079
CIL_0001T9 CIL_0001T9_0002 CGP 3:72371825-72861914

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003714 IEA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0007275 TAS multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0031519 IDA PcG protein complex
GO:0035518 IDA histone H2A monoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101118 Rybp-201 protein_coding Mus_musculus 0 2283
ENSMUST00000069489 Gm6910-201 processed_pseudogene Mus_musculus 0 2089
ENSDART00000075497 rybpb-001 protein_coding Danio_rerio 4e-20 106

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