C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich repeats and immunoglobulin-like domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101126 Lrig1-002 ENSMUSG00000030029 10090 - 6:94604536-94700137 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101126
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101126 4.490±1.37 2.922±0.21 3.543±1.92 5.123±2.13 7.722±1.27 2.815±0.05 1.558±0.65 1.315±0.35 2.786±0.84 8.593±3.68 5.147±1.25 1.837±0.46 0.902±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034P CIL_00034P_0002 CGP 6:93675455-94604648
CIL_0009B3 CIL_0009B3_0002 VISTA 6:94453098-95057440
CIL_0003RB CIL_0003RB_0003 CGP 6:94500314-94700158
CIL_0003RC CIL_0003RC_0003 CGP 6:94604529-95129718

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007605 IMP sensory perception of sound
GO:0016021 IEA integral component of membrane
GO:0032474 IGI otolith morphogenesis
GO:0060384 IGI innervation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273261 LRIG1-001 protein_coding Homo_sapiens 0 3175
ENST00000354883 SLC25A26-001 protein_coding Homo_sapiens 0 202
ENST00000383703 LRIG1-002 protein_coding Homo_sapiens 0 1256
ENST00000464350 SLC25A26-003 nonsense_mediated_decay Homo_sapiens 4.99997e-41 174
ENST00000483224 SLC25A26-004 nonsense_mediated_decay Homo_sapiens 0 202
ENST00000495037 LRIG1-005 processed_transcript Homo_sapiens 0 1781
ENST00000496559 LRIG1-004 processed_transcript Homo_sapiens 0 1997
ENST00000497721 LRIG1-009 processed_transcript Homo_sapiens 0 580
ENST00000498287 LRIG1-006 processed_transcript Homo_sapiens 0 520

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