C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell division cycle associated 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102691 Cdca7-001 ENSMUSG00000055612 10090 + 2:72476159-72486893 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102691
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102691 4.567±4.21 0.424±0.22 7.128±0.38 12.493±10.41 1.629±0.51 5.537±2.81 0.362±0.17 0.317±0.08 11.748±12.22 1.489±0.26 0.150±0.09 5.939±2.70 12.009±6.35 1.574±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JV CIL_0008JV_0002 VISTA 2:72126155-72727698
CIL_0004KE CIL_0004KE_0002 CGP 2:72285637-72486893
CIL_0007OE CIL_0007OE_0002 UCNEbase 2:72378722-73287933
CIL_0004JD CIL_0004JD_0002 CGP 2:72476159-72980446

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0042127 IEA regulation of cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306721 CDCA7-001 protein_coding Homo_sapiens 0 706
ENST00000347703 CDCA7-002 protein_coding Homo_sapiens 0 885
ENST00000410019 CDCA7-004 protein_coding Homo_sapiens 0 706
ENST00000410101 CDCA7-003 protein_coding Homo_sapiens 0 706
ENST00000435616 CDCA7-007 nonsense_mediated_decay Homo_sapiens 5.60519e-45 185
ENST00000467411 CDCA7-006 retained_intron Homo_sapiens 0 363
ENST00000468359 CDCA7-008 retained_intron Homo_sapiens 0 442
ENST00000496441 CDCA7-005 retained_intron Homo_sapiens 0 553
ENST00000604325 XXbac-BPGBPG24O18.1-001 processed_pseudogene Homo_sapiens 0 503

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