C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004JD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144354-ENSG00000172845 CGP 9606 2:173354820-173965702
GeneTranscriptPositionBiotype
ENSG00000144354 (CDCA7)
cell division cycle associated 7 		ENST00000306721 (CDCA7-001) 173354861-173368997 protein_coding
ENST00000347703 (CDCA7-002) 173354820-173368904 protein_coding
ENST00000410019 (CDCA7-004) 173354872-173368070 protein_coding
ENST00000410101 (CDCA7-003) 173354872-173367720 protein_coding
ENST00000435616 (CDCA7-007) 173354888-173364873 nonsense_mediated_decay
ENST00000467411 (CDCA7-006) 173354893-173368904 retained_intron
ENST00000468359 (CDCA7-008) 173358507-173365516 retained_intron
ENST00000496441 (CDCA7-005) 173354872-173368500 retained_intron
ENSG00000172845 (SP3)
Sp3 transcription factor 		ENST00000310015 (SP3-001) 173906459-173965702 protein_coding
ENST00000416195 (SP3-002) 173908530-173964553 protein_coding
ENST00000418194 (SP3-003) 173908530-173964219 protein_coding
ENST00000462904 (SP3-007) 173955817-173965310 processed_transcript
ENST00000465379 (SP3-004) 173908532-173916832 retained_intron
ENST00000483084 (SP3-005) 173956074-173963379 processed_transcript
ENST00000490182 (SP3-008) 173956081-173964885 processed_transcript
ENSG00000213148 (AC073465.1)
 ENST00000456671 (AC073465.1-001) 173431349-173431812 processed_pseudogene
ENSG00000224638 (AC106900.6)
 ENST00000418620 (AC106900.6-001) 173880865-173899428 lincRNA
ENSG00000226131 (AC073465.3)
 ENST00000440938 (AC073465.3-001) 173485865-173486362 processed_pseudogene
ENSG00000234415 (RPL5P7)
ribosomal protein L5 pseudogene 7 		ENST00000444235 (RPL5P7-001) 173871653-173872465 processed_pseudogene
ENSG00000236391 (AC092573.2)
 ENST00000434546 (AC092573.2-001) 173338219-173338461 transcribed_processed_pseudogene
ENST00000437243 (AC092573.2-002) 173338340-173356208 processed_transcript
ENSG00000237016 (AC013410.1)
 ENST00000436223 (AC013410.1-001) 173575110-173576341 processed_pseudogene
ENSG00000270460 (RP11-796E10.1)
 ENST00000604994 (RP11-796E10.1-001) 173811076-173811392 lincRNA
CIL_0004JD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055612-ENSMUSG00000027109 CGP 10090 2:72476159-72980446
GeneTranscriptPositionBiotype
ENSMUSG00000027109 (Sp3)
trans-acting transcription factor 3 		ENSMUST00000066003 (Sp3-002) 72936648-72980426 protein_coding
ENSMUST00000102689 (Sp3-001) 72936427-72980446 protein_coding
ENSMUST00000129565 (Sp3-005) 72938280-72941084 processed_transcript
ENSMUST00000133615 (Sp3-003) 72936652-72979286 processed_transcript
ENSMUST00000141372 (Sp3-004) 72946396-72970466 processed_transcript
ENSMUSG00000055612 (Cdca7)
cell division cycle associated 7 		ENSMUST00000102691 (Cdca7-001) 72476159-72486893 protein_coding
ENSMUST00000127344 (Cdca7-004) 72476390-72481860 processed_transcript
ENSMUST00000130730 (Cdca7-002) 72483564-72484743 processed_transcript
ENSMUST00000137880 (Cdca7-003) 72485107-72486202 processed_transcript
ENSMUST00000157019 (Cdca7-005) 72476253-72482497 protein_coding
ENSMUSG00000063714 (Sp3os)
trans-acting transcription factor 3, opposite strand 		ENSMUST00000123087 (Sp3os-001) 72979424-72988677 antisense
ENSMUST00000135297 (Sp3os-002) 72979424-72988442 antisense
ENSMUST00000137941 (Sp3os-004) 72987241-72988607 antisense
ENSMUST00000146195 (Sp3os-003) 72979516-72988546 antisense
ENSMUSG00000081957 (Ak3l2-ps)
adenylate kinase 3-like 2, pseudogene 		ENSMUST00000120282 (Ak3l2-ps-001) 72633936-72634607 processed_pseudogene
ENSMUSG00000083279 (Pex13-ps)
peroxisomal biogenesis factor 13, pseudogene 		ENSMUST00000118184 (Pex13-ps-001) 72632270-72633426 processed_pseudogene
ENSMUSG00000084213 (Hspe1-ps5)
heat shock protein 1 (chaperonin 10), pseudogene 5 		ENSMUST00000118080 (Hspe1-ps5-001) 72955898-72956194 processed_pseudogene
ENSMUSG00000085252 (8430437L04Rik)
RIKEN cDNA 8430437L04 gene 		ENSMUST00000124829 (8430437L04Rik-001) 72703510-72729468 lincRNA
ENSMUSG00000085427 (6430710C18Rik)
RIKEN cDNA 6430710C18 gene 		ENSMUST00000125382 (6430710C18Rik-004) 72746505-72750853 lincRNA
ENSMUST00000125746 (6430710C18Rik-003) 72784991-72800154 lincRNA
ENSMUST00000136807 (6430710C18Rik-001) 72745846-72813672 lincRNA
ENSMUST00000148327 (6430710C18Rik-002) 72784674-72813717 lincRNA
ENSMUSG00000092851 (Gm25960)
predicted gene, 25960 		ENSMUST00000175110 (Gm25960-201) 72950863-72950987 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004JD_0001ENSG00000144354ENST00000306721ENST00000347703ENST00000410019ENST00000410101ENST00000435616ENST00000467411ENST00000468359ENST00000496441ENSG00000172845ENST00000310015ENST00000416195ENST00000418194ENST00000462904ENST00000465379ENST00000483084ENST00000490182ENSG00000213148ENST00000456671ENSG00000224638ENST00000418620ENSG00000226131ENST00000440938ENSG00000234415ENST00000444235ENSG00000236391ENST00000434546ENST00000437243ENSG00000237016ENST00000436223ENSG00000270460ENST00000604994CIL_0004JD_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004JD_0001ENSG00000144354ENST00000306721ENST00000347703ENST00000410019ENST00000410101ENST00000435616ENST00000467411ENST00000496441ENSG00000172845ENST00000310015ENST00000416195ENST00000418194ENST00000465379ENSG00000213148ENST00000456671ENSG00000224638ENST00000418620ENSG00000226131ENST00000440938ENSG00000234415ENST00000444235ENSG00000236391ENST00000434546ENST00000437243ENSG00000237016ENST00000436223ENSG00000270460ENST00000604994CIL_0004JD_0002ENSMUSG00000027109ENSMUST00000066003ENSMUST00000102689ENSMUST00000133615ENSMUST00000141372ENSMUSG00000055612ENSMUST00000102691ENSMUST00000127344ENSMUST00000130730ENSMUST00000137880ENSMUSG00000063714ENSMUST00000123087ENSMUST00000135297ENSMUSG00000081957ENSMUST00000120282ENSMUSG00000083279ENSMUST00000118184ENSMUSG00000084213ENSMUST00000118080ENSMUSG00000085252ENSMUST00000124829ENSMUSG00000085427ENSMUST00000125382ENSMUST00000125746ENSMUST00000136807ENSMUST00000148327ENSMUSG00000092851ENSMUST00000175110
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144354 ENST00000306721 N/A N/A N/A 0.025±0.00 0.119±0.00 1.917±0.00 N/A N/A N/A N/A 0.416±0.30 3.888±3.67 0.576±0.05 1.222±0.69
ENST00000347703 0.294±0.00 0.502±0.00 N/A 0.280±0.00 0.477±0.00 0.559±0.00 N/A 0.162±0.00 0.012±0.00 0.374±0.00 N/A 14.138±7.11 2.083±1.19 3.222±0.00
ENST00000410019 0.337±0.00 N/A N/A N/A N/A N/A 0.220±0.11 0.079±0.00 N/A 0.292±0.05 0.760±0.00 0.250±0.00 N/A 2.470±0.00
ENST00000410101 N/A 0.803±0.00 N/A N/A N/A N/A N/A N/A N/A 0.341±0.00 0.565±0.00 40.278±0.00 3.354±0.00 2.446±0.00
ENST00000435616 N/A N/A 0.372±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467411 N/A 0.201±0.00 N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496441 N/A N/A N/A N/A N/A N/A 0.066±0.03 N/A N/A N/A N/A 6.799±0.00 N/A N/A
ENSG00000172845 ENST00000310015 2.809±0.00 3.784±0.00 0.824±0.00 0.874±0.17 2.134±0.46 0.813±0.00 0.893±0.00 N/A 1.318±0.74 2.001±0.90 N/A 1.745±0.16 0.942±0.23 0.904±0.00
ENST00000416195 5.266±0.00 4.049±0.00 N/A 3.600±0.04 11.879±3.79 4.397±0.26 2.134±1.12 4.495±0.13 1.977±0.00 8.030±1.19 5.643±1.91 8.415±0.76 5.398±0.36 11.377±5.95
ENST00000418194 11.447±0.00 5.760±0.00 2.593±0.00 3.727±1.16 4.734±0.00 10.994±3.39 3.791±0.38 4.413±1.40 7.720±6.41 6.640±1.92 1.724±0.00 8.449±5.24 2.836±2.05 3.491±1.43
ENST00000462904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465379 N/A N/A N/A N/A N/A 2.777±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213148 ENST00000456671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.02
ENSG00000224638 ENST00000418620 0.075±0.00 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.289±0.13
ENSG00000226131 ENST00000440938 0.029±0.00 0.090±0.00 N/A 0.063±0.00 0.030±0.00 N/A 0.027±0.00 0.148±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000234415 ENST00000444235 N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A 0.014±0.00 N/A N/A N/A N/A 0.014±0.00
ENSG00000236391 ENST00000434546 N/A N/A N/A N/A 0.062±0.00 N/A 0.057±0.00 0.062±0.00 N/A N/A N/A N/A 0.162±0.00 0.112±0.00
ENST00000437243 N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000237016 ENST00000436223 N/A N/A N/A 0.009±0.00 0.019±0.00 N/A N/A N/A N/A N/A 0.008±0.00 0.223±0.21 N/A 0.014±0.00
ENSG00000270460 ENST00000604994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.243±0.01 0.353±0.04 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027109 ENSMUST00000066003 N/A N/A 2.480±0.00 2.309±1.22 3.876±1.06 N/A 2.208±1.03 1.093±0.00 3.503±1.55 N/A 1.385±0.39 2.848±0.00 10.230±3.88 N/A
ENSMUST00000102689 2.729±0.00 N/A 4.546±0.75 6.572±0.66 4.393±0.00 3.931±0.86 1.219±0.24 2.333±0.96 4.014±1.97 5.285±0.19 2.900±0.27 5.911±2.33 5.494±2.04 0.809±0.54
ENSMUST00000129565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133615 9.815±3.11 14.491±1.07 5.122±0.00 4.013±3.14 9.489±5.02 10.641±0.63 2.080±0.95 4.276±1.55 6.019±3.98 8.749±0.26 1.824±0.53 11.867±5.26 7.731±3.50 2.227±1.28
ENSMUST00000141372 N/A N/A N/A 4.342±0.00 15.691±0.00 N/A N/A N/A N/A N/A N/A 15.545±0.00 18.924±0.00 4.574±0.00
ENSMUSG00000055612 ENSMUST00000102691 4.567±4.21 0.424±0.22 7.128±0.38 12.493±10.41 1.629±0.51 5.537±2.81 0.362±0.17 0.317±0.08 11.748±12.22 1.489±0.26 0.150±0.09 5.939±2.70 12.009±6.35 1.574±0.38
ENSMUST00000127344 N/A 0.211±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130730 N/A N/A N/A 2.086±0.00 N/A N/A N/A 0.404±0.00 N/A N/A 0.077±0.00 13.484±0.00 21.400±0.00 N/A
ENSMUST00000137880 5.997±5.31 0.461±0.25 4.874±0.77 7.603±5.42 3.155±2.30 5.410±1.10 0.637±0.18 0.627±0.18 7.319±7.35 2.240±0.59 0.102±0.00 6.738±2.69 12.457±8.61 1.439±0.40
ENSMUST00000157019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000063714 ENSMUST00000123087 N/A N/A N/A 7.667±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135297 N/A 17.785±2.96 N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.570±5.31 N/A N/A
ENSMUST00000137941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081957 ENSMUST00000120282 0.169±0.10 0.198±0.07 0.051±0.01 0.089±0.03 0.400±0.23 0.298±0.16 0.411±0.20 3.744±0.40 0.488±0.24 0.338±0.18 N/A 0.761±0.63 0.207±0.09 0.189±0.11
ENSMUSG00000083279 ENSMUST00000118184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.02 0.058±0.01
ENSMUSG00000084213 ENSMUST00000118080 0.605±0.18 N/A 0.478±0.00 1.288±0.39 1.775±0.69 0.852±0.28 0.624±0.33 0.308±0.00 0.696±0.33 0.644±0.11 N/A 2.196±2.61 0.808±0.31 0.439±0.18
ENSMUSG00000085252 ENSMUST00000124829 N/A N/A N/A N/A N/A N/A 0.028±0.01 N/A 0.011±0.00 N/A N/A N/A 0.016±0.01 N/A
ENSMUSG00000085427 ENSMUST00000125382 N/A N/A N/A N/A N/A 0.355±0.18 0.121±0.00 N/A 0.098±0.04 N/A 0.114±0.00 N/A 0.565±0.25 N/A
ENSMUST00000125746 N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A
ENSMUST00000136807 N/A N/A 0.011±0.00 0.010±0.00 N/A 0.075±0.01 0.124±0.05 0.027±0.00 N/A N/A 0.015±0.00 0.057±0.02 0.112±0.08 N/A
ENSMUST00000148327 N/A N/A N/A 0.066±0.00 N/A N/A 0.072±0.03 0.041±0.00 0.026±0.00 N/A N/A 0.291±0.13 N/A 0.427±0.19
ENSMUSG00000092851 ENSMUST00000175110 N/A N/A 134.174±25.71 109.738±66.54 1917.365±911.52 N/A 867.103±0.00 1727.810±0.00 69.015±25.91 2168.243±1218.54 6.851±0.00 837.899±1110.11 65.477±65.23 459.275±448.07

Loading