C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetratricopeptide repeat domain 21B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102718 Ttc21b-001 ENSMUSG00000034848 10090 - 2:66184327-66256617 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102718
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102718 2.756±1.46 2.815±0.53 4.203±0.08 4.497±1.63 2.123±0.25 1.456±0.16 1.710±0.34 4.683±0.24 0.843±0.19 3.058±0.20 0.530±0.14 3.595±1.38 1.117±0.84 23.344±1.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0002 VISTA 2:65692128-66294633
CIL_0006CI CIL_0006CI_0002 CGP 2:66082766-66256617
CIL_0006CL CIL_0006CL_0002 CGP 2:66184327-66440840

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005929 IDA cilium
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007224 IMP smoothened signaling pathway
GO:0008589 IMP regulation of smoothened signaling pathway
GO:0021591 IMP ventricular system development
GO:0021798 IMP forebrain dorsal/ventral pattern formation
GO:0030991 ISS intraciliary transport particle A
GO:0035721 IMP intraciliary retrograde transport
GO:0035735 IMP intraciliary transport involved in cilium morphogenesis
GO:0060271 IMP cilium morphogenesis
GO:0061512 IEA protein localization to cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243344 TTC21B-001 protein_coding Homo_sapiens 0 3733
ENST00000392695 TTC21B-003 nonsense_mediated_decay Homo_sapiens 0 1002

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