C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor, alpha-induced protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102745 Tnfaip2-001 ENSMUSG00000021281 10090 + 12:111442469-111455018 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102745
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102745 7.656±1.65 9.003±1.55 40.254±19.10 0.386±0.03 12.987±4.61 5.509±1.15 14.329±1.27 13.727±0.87 21.781±14.57 14.390±1.57 10.851±2.10 10.928±4.88 14.655±8.82 23.119±11.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AG CIL_0009AG_0002 VISTA 12:110842738-111443613
CIL_0000OP CIL_0000OP_0002 CGP 12:111417430-111455018

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000145 IEA exocyst
GO:0001525 IEA angiogenesis
GO:0006887 IEA exocytosis
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333007 TNFAIP2-201 protein_coding Homo_sapiens 0 1550
ENST00000559255 TNFAIP2-005 protein_coding Homo_sapiens 0 481
ENST00000559406 TNFAIP2-003 nonsense_mediated_decay Homo_sapiens 0 1109
ENST00000560428 TNFAIP2-008 retained_intron Homo_sapiens 8e-38 161
ENST00000560562 TNFAIP2-002 nonsense_mediated_decay Homo_sapiens 0 261
ENST00000560670 TNFAIP2-004 protein_coding Homo_sapiens 0 798
ENST00000560869 TNFAIP2-001 protein_coding Homo_sapiens 0 1557
ENST00000561156 TNFAIP2-009 nonsense_mediated_decay Homo_sapiens 0 307

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