C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ciliary neurotrophic factor receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102961 Cntfr-001 ENSMUSG00000028444 10090 - 4:41657498-41695442 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102961
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102961 0.805±0.08 9.047±4.97 16.702±3.26 11.460±3.63 3.481±1.87 0.786±0.23 1.791±1.14 2.644±1.08 0.537±0.23 3.624±0.66 6.365±2.82 3.926±2.19 0.529±0.50 0.732±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XA CIL_0002XA_0002 CGP 4:41638144-41697089

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001967 IMP suckling behavior
GO:0003360 IMP brainstem development
GO:0004897 IGI ciliary neurotrophic factor receptor activity
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007548 IMP sex differentiation
GO:0008284 IGI positive regulation of cell proliferation
GO:0019955 IEA cytokine binding
GO:0031225 IEA anchored component of membrane
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0060538 IMP skeletal muscle organ development
GO:0070120 IGI ciliary neurotrophic factor-mediated signaling pathway
GO:0097059 IEA CNTFR-CLCF1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351266 CNTFR-002 protein_coding Homo_sapiens 0 2237
ENST00000378980 CNTFR-001 protein_coding Homo_sapiens 0 2333
ENST00000417345 CNTFR-003 protein_coding Homo_sapiens 0 1072
ENST00000610543 CNTFR-201 protein_coding Homo_sapiens 0 2255

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