C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12355
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000104933 Gm12355-001 ENSMUSG00000078134 10090 - 11:98624351-98625661 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000104933
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000104933 0.042±0.00 0.138±0.00 2.469±2.35 6.519±4.84 0.122±0.06 0.187±0.00 0.087±0.04 0.104±0.05 2.334±4.56 0.129±0.06 0.041±0.02 0.187±0.16 0.043±0.02 0.125±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080Z CIL_00080Z_0002 VISTA 11:98039002-98639485
CIL_00098W CIL_00098W_0002 VISTA 11:98077499-98680383
CIL_0007WH CIL_0007WH_0002 VISTA 11:98091902-98695006
CIL_00098Y CIL_00098Y_0002 VISTA 11:98447152-99051430

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339436 SRSF3-003 retained_intron Homo_sapiens 0 466
ENST00000373715 SRSF3-001 protein_coding Homo_sapiens 0 1027
ENST00000436597 AC092106.1-001 processed_pseudogene Homo_sapiens 0 542
ENST00000458090 AC009963.6-001 processed_pseudogene Homo_sapiens 0 510
ENST00000477442 SRSF3-002 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000537438 RP11-137N23.1-001 processed_pseudogene Homo_sapiens 0 553
ENST00000613941 SRSF3-006 nonsense_mediated_decay Homo_sapiens 9.80909e-45 183
ENST00000614136 SRSF3-005 retained_intron Homo_sapiens 0 403
ENST00000620389 SRSF3-004 retained_intron Homo_sapiens 0 568
ENST00000620941 SRSF3-007 protein_coding Homo_sapiens 0 894

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