C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cold inducible RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105365 Cirbp-001 ENSMUSG00000045193 10090 + 10:80167778-80171655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105365
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105365 18.678±2.55 43.888±3.12 58.101±18.80 19.787±6.80 14.546±2.25 22.195±9.35 19.995±3.12 7.186±1.84 40.138±4.52 24.746±2.22 25.339±8.56 10.096±5.80 43.343±17.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QP CIL_0000QP_0002 CGP 10:80148272-80172786
CIL_0000QS CIL_0000QS_0002 CGP 10:80165985-80175146

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0009409 IEA response to cold
GO:0009411 ISS response to UV
GO:0010494 IDA cytoplasmic stress granule
GO:0017148 IDA negative regulation of translation
GO:0030371 IDA translation repressor activity
GO:0034063 IDA stress granule assembly
GO:0045727 ISS positive regulation of translation
GO:0048255 ISS mRNA stabilization
GO:0070181 ISS small ribosomal subunit rRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320936 CIRBP-001 protein_coding Homo_sapiens 0 200
ENST00000413636 CIRBP-008 protein_coding Homo_sapiens 0 200
ENST00000586472 CIRBP-034 protein_coding Homo_sapiens 0 200
ENST00000586548 CIRBP-021 protein_coding Homo_sapiens 0 200
ENST00000587169 CIRBP-004 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000588030 CIRBP-011 protein_coding Homo_sapiens 0 200
ENST00000588090 CIRBP-018 protein_coding Homo_sapiens 0 200
ENST00000588917 CIRBP-044 retained_intron Homo_sapiens 0 200
ENST00000589710 CIRBP-005 protein_coding Homo_sapiens 0 200
ENST00000590347 CIRBP-009 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000593093 CIRBP-002 retained_intron Homo_sapiens 0 200

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