C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cold inducible RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413636 CIRBP-008 ENSG00000099622 9606 + 19:1269332-1273172 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyENST00000413636
Transcript ID Breast Kidney
ENST00000413636 2.234±0.00 2.210±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QP CIL_0000QP_0001 CGP 19:1248553-1274880
CIL_0000QS CIL_0000QS_0001 CGP 19:1259384-1279249

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0009411 IDA response to UV
GO:0010494 ISS cytoplasmic stress granule
GO:0030371 ISS translation repressor activity
GO:0034063 ISS stress granule assembly
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation
GO:0048255 IDA mRNA stabilization
GO:0070181 IDA small ribosomal subunit rRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105365 Cirbp-001 protein_coding Mus_musculus 0 200
ENSMUST00000151321 Cirbp-003 retained_intron Mus_musculus 4e-39 167
ENSMUST00000140774 Cirbp-002 retained_intron Mus_musculus 8e-31 139

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