C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105847 Kdm1a-002 ENSMUSG00000036940 10090 - 4:136550544-136602687 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105847
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105847 7.364±2.30 1.624±0.00 9.168±0.04 16.894±7.66 6.841±2.86 2.250±0.00 5.093±1.15 4.534±1.39 4.926±3.15 6.025±1.94 4.973±0.87 11.385±6.90 18.107±4.11 21.034±2.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000208 CIL_000208_0002 CGP 4:136469761-136602723

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IMP in utero embryonic development
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0008134 IPI transcription factor binding
GO:0008283 IMP cell proliferation
GO:0016491 IEA oxidoreductase activity
GO:0021983 IMP pituitary gland development
GO:0034720 IEA histone H3-K4 demethylation
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046886 IMP positive regulation of hormone biosynthetic process
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356634 KDM1A-001 protein_coding Homo_sapiens 0 2824
ENST00000400181 KDM1A-002 protein_coding Homo_sapiens 0 3496
ENST00000465864 KDM1A-005 protein_coding Homo_sapiens 0 701
ENST00000481879 KDM1A-003 retained_intron Homo_sapiens 0 309
ENST00000494920 KDM1A-004 protein_coding Homo_sapiens 0 1090
ENST00000602503 KDM1A-006 retained_intron Homo_sapiens 0 220

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