C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: guanylate binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355754 GBP4-001 ENSG00000162654 9606 - 1:89181148-89198932 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355754
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355754 4.899±0.00 4.159±0.00 0.701±0.00 0.766±0.14 4.341±0.40 1.719±0.57 2.190±0.84 3.111±0.16 1.759±0.24 19.265±10.90 1.197±1.07 2.425±1.21 4.426±1.60 1.420±1.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_0008 CGP 1:89131751-89198932
CIL_000033 CIL_000033_0007 CGP 1:89181148-89272804

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006184 IEA GTP catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106221 Gbp3-003 protein_coding Mus_musculus 0 1336
ENSMUST00000029935 Gbp3-001 protein_coding Mus_musculus 0 1336
ENSMUST00000106222 Gbp3-002 protein_coding Mus_musculus 0 1336
ENSMUST00000045097 Gbp7-201 protein_coding Mus_musculus 0 1201
ENSMUST00000171263 Gbp7-202 protein_coding Mus_musculus 0 1201
ENSMUST00000065588 Gbp6-202 protein_coding Mus_musculus 0 963
ENSMUST00000050011 Gbp6-201 protein_coding Mus_musculus 0 957
ENSMUST00000100961 Gbp9-202 protein_coding Mus_musculus 0 907
ENSMUST00000031238 Gbp9-201 protein_coding Mus_musculus 0 907
ENSMUST00000142731 Gbp3-006 processed_transcript Mus_musculus 0 582
ENSMUST00000112718 Gbp8-202 protein_coding Mus_musculus 0 490
ENSMUST00000031235 Gbp8-201 protein_coding Mus_musculus 0 490
ENSDART00000097448 si:ch211-209n20.1-201 protein_coding Danio_rerio 2e-37 163
ENSDART00000097447 si:ch211-209n20.1-202 protein_coding Danio_rerio 8e-36 158
ENSDART00000141250 si:ch211-209n20.1-001 protein_coding Danio_rerio 8e-36 158

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