C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106267 Stx1b-001 ENSMUSG00000030806 10090 - 7:127803900-127824549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000106267
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000106267 6.589±3.76 4.428±1.55 1.922±0.00 64.868±45.21 6.603±2.63 2.268±0.43 1.256±0.19 1.081±0.08 2.300±1.02 1.419±0.00 2.959±1.28 2.823±1.29 0.697±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001X8 CIL_0001X8_0002 CGP 7:127785608-127824549
CIL_0001XW CIL_0001XW_0002 CGP 7:127803900-127849019

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0001956 IGI positive regulation of neurotransmitter secretion
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI protein binding
GO:0005886 IMP plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0010468 IMP regulation of gene expression
GO:0010807 IGI regulation of synaptic vesicle priming
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016081 IGI synaptic vesicle docking involved in exocytosis
GO:0017157 IEA regulation of exocytosis
GO:0019901 IPI protein kinase binding
GO:0019904 IEA protein domain specific binding
GO:2000463 IGI positive regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000081951 stx1b-001 protein_coding Danio_rerio 0 719
ENST00000215095 STX1B-001 protein_coding Homo_sapiens 0 1531
ENST00000561836 STX1B-004 retained_intron Homo_sapiens 0 484
ENST00000565419 STX1B-003 protein_coding Homo_sapiens 0 1086
ENST00000566211 STX1B-005 retained_intron Homo_sapiens 0 231
ENST00000569638 STX1B-002 protein_coding Homo_sapiens 0 1059

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